ENSG00000128039


Homo sapiens

Features
Gene ID: ENSG00000128039
  
Biological name :SRD5A3
  
Synonyms : Q9H8P0 / SRD5A3 / steroid 5 alpha-reductase 3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: q12
Gene start: 55346109
Gene end: 55373096
  
Corresponding Affymetrix probe sets: 218800_at (Human Genome U133 Plus 2.0 Array)   222750_s_at (Human Genome U133 Plus 2.0 Array)   243444_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000264228
Ensembl peptide - ENSP00000424714
NCBI entrez gene - 79644     See in Manteia.
OMIM - 611715
RefSeq - XM_017008601
RefSeq - NM_024592
RefSeq - XM_005265766
RefSeq - XM_005265767
RefSeq Peptide - NP_078868
swissprot - H0Y9P9
swissprot - Q9H8P0
Ensembl - ENSG00000128039
  
Related genetic diseases (OMIM): 612379 - Congenital disorder of glycosylation, type Iq, 612379
  612713 - Kahrizi syndrome, 612713
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q5RIU9ENSDARG00000043307Danio rerio
 SRD5A3ENSGALG00000013804Gallus gallus
 Q9WUP4ENSMUSG00000029233Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001104  3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006486 protein glycosylation IEA
 biological_processGO:0006488 dolichol-linked oligosaccharide biosynthetic process IEA
 biological_processGO:0006489 dolichyl diphosphate biosynthetic process TAS
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006702 androgen biosynthetic process TAS
 biological_processGO:0016095 polyprenol catabolic process IDA
 biological_processGO:0019348 dolichol metabolic process IDA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003865 3-oxo-5-alpha-steroid 4-dehydrogenase activity TAS
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEA
 molecular_functionGO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor TAS
 molecular_functionGO:0047751 cholestenone 5-alpha-reductase activity IEA
 molecular_functionGO:0102389 polyprenol reductase activity IEA


Pathways (from Reactome)
Pathway description
Androgen biosynthesis
Synthesis of Dolichyl-phosphate
Defective SRD5A3 causes SRD5A3-CDG (CDG-1q) and KHRZ


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000179 Prominent lower lip "Increased thickness of the lower lip, leading to a prominent appearance of the lower lip." [HPO:curators]
Show

 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
Show

 HP:0000316 Hypertelorism 
Show

 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
Show

 HP:0000414 Bulbous nose 
Show

 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
Show

 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
Show

 HP:0000572 Visual loss 
Show

 HP:0000589 Coloboma "A developmental defect characterized by a cleft of some portion of the `eye` (FMA:54448`) or ocular adnexa." [HPO:probinson]
Show

 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000962 Hyperkeratosis "Hyperkeratosis is thickening of the outer layer of the skin, the stratum corneum, which is composed of large, polyhedral, plate-like envelopes filled with keratin which are the dead cells that have migrated up from the stratum granulosum." [HPO:curators]
Show

 HP:0000964 Eczema "Eczema is a form of dermatitis. The term eczema is broadly applied to a range of persistent skin conditions and can be related to a number of underlying conditions. Manifestations of eczema can include dryness and recurring skin rashes with redness, skin edema, itching and dryness, crusting, flaking, blistering, cracking, oozing, or bleeding." [HPO:curators]
Show

 HP:0000973 Cutis laxa 
Show

 HP:0000998 Hypertrichosis "Hypertrichosis is increased hair growth that is abnormal in quantity or location." [HPO:curators]
Show

 HP:0001000 Abnormality of skin pigmentation 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001270 Motor retardation 
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001320 Cerebellar vermis hypoplasia 
Show

 HP:0001935 Microcytic anemia 
Show

 HP:0001976 Antithrombin III deficiency 
Show

 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
Show

 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
Show

 HP:0002942 Thoracic kyphosis 
Show

 HP:0002987 Elbow contractures 
Show

 HP:0003593 Early onset 
Show

 HP:0003642 Abnormal isoelectric focusing of serum transferrin (type 1 pattern) 
Show

 HP:0005280 Depressed nasal root and bridge 
Show

 HP:0005306 Capillary hemangiomas "The presence of a capillary hemangiomas, which are hemangiomas with small endothelial spaces." [HPO:curators]
Show

 HP:0006380 Knee flexion deformities 
Show

 HP:0006887 Mental retardation, progressive "Mental retardation is defined as a decreased intelligence quotient of varying degree. The term progressive mental retardation should be used if intelligence decreases/deteriorates over time." [HPO:curators]
Show

 HP:0008064 Ichthyosiform abnormality of the skin 
Show

 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr