ENSG00000131165


Homo sapiens

Features
Gene ID: ENSG00000131165
  
Biological name :CHMP1A
  
Synonyms : charged multivesicular body protein 1A / CHMP1A / Q9HD42
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: q24.3
Gene start: 89644431
Gene end: 89657845
  
Corresponding Affymetrix probe sets: 201933_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000442120
Ensembl peptide - ENSP00000380998
Ensembl peptide - ENSP00000447899
Ensembl peptide - ENSP00000449243
NCBI entrez gene - 5119     See in Manteia.
OMIM - 164010
RefSeq - NM_001083314
RefSeq - NM_002768
RefSeq Peptide - NP_001076783
RefSeq Peptide - NP_002759
swissprot - Q9HD42
swissprot - F5H875
swissprot - F8VUA2
swissprot - F8VVT7
Ensembl - ENSG00000131165
  
Related genetic diseases (OMIM): 614961 - Pontocerebellar hypoplasia, type 8, 614961
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 chmp1aENSDARG00000102643Danio rerio
 CHMP1AENSGALG00000006161Gallus gallus
 Chmp1aENSMUSG00000000743Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CHMP1B / Q7LBR1 / charged multivesicular body protein 1BENSG0000025511256


Protein motifs (from Interpro)
Interpro ID Name
 IPR005024  Snf7 family
 IPR029888  Charged multivesicular body protein 1a


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000920 cell separation after cytokinesis IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006997 nucleus organization IMP
 biological_processGO:0007034 vacuolar transport IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007076 mitotic chromosome condensation IEA
 biological_processGO:0007080 mitotic metaphase plate congression IMP
 biological_processGO:0010824 regulation of centrosome duplication IMP
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0016458 gene silencing IDA
 biological_processGO:0036258 multivesicular body assembly NAS
 biological_processGO:0039702 viral budding via host ESCRT complex NAS
 biological_processGO:0045786 negative regulation of cell cycle IMP
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0051301 cell division IMP
 biological_processGO:1901673 regulation of mitotic spindle assembly IMP
 biological_processGO:1904903 ESCRT III complex disassembly NAS
 cellular_componentGO:0000794 condensed nuclear chromosome IDA
 cellular_componentGO:0000815 ESCRT III complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IDA
 cellular_componentGO:0005815 microtubule organizing center IDA
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0012505 endomembrane system IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016363 nuclear matrix IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008237 metallopeptidase activity TAS
 molecular_functionGO:0008270 zinc ion binding TAS
 molecular_functionGO:0019904 protein domain specific binding IPI
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000483 Astigmatism 
Show

 HP:0000540 Hypermetropia 
Show

 HP:0000545 Myopia 
Show

 HP:0000565 Esotropia 
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000998 Hypertrichosis "Hypertrichosis is increased hair growth that is abnormal in quantity or location." [HPO:curators]
Show

 HP:0001249 Mental retardation 
Show

 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001321 Cerebellar hypoplasia 
Show

 HP:0001344 Absent speech development 
Show

 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
Show

 HP:0001761 Pes cavus 
Show

 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
Show

 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
Show

 HP:0002020 Gastroesophageal reflux 
Show

 HP:0002072 Chorea "Chorea (Greek for dance ) refers to widespread arrhythmic involuntary movements of a forcible, jerky and restless fashion." [HPO:curators]
Show

 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
Show

 HP:0002365 Hypoplasia of the brainstem 
Show

 HP:0002465 Poor speech 
Show

 HP:0002804 Arthrogryposis multiplex congenita 
Show

 HP:0003577 Onset at birth 
Show

 HP:0004684 ankle valgus deformity 
Show

 HP:0005484 Microcephaly, postnatal 
Show

 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
Show

 HP:0100704 Cortical visual impairment "A form of loss of vision caused by damage to the visual cortex rather than a defect in the eye." [HPO:probinson]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr