ENSDARG00000102643


Danio rerio

Features
Gene ID: ENSDARG00000102643
  
Biological name :chmp1a
  
Synonyms : charged multivesicular body protein 1A / chmp1a
  
Possible biological names infered from orthology : Q921W0 / Q9HD42
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 37435335
Gene end: 37441657
  
Corresponding Affymetrix probe sets: Dr.10291.1.A1_at (Zebrafish Array)   Dr.10291.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000130498
Ensembl peptide - ENSDARP00000141533
swissprot - A0A0R4IC92
swissprot - A0A0R4IZC4
ZFIN ID - ZDB-GENE-040426-1474
Ensembl - ENSDARG00000102643
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CHMP1AENSGALG00000006161Gallus gallus
 CHMP1AENSG00000131165Homo sapiens
 Chmp1aENSMUSG00000000743Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
chmp1b / Q7ZVB1 / chromatin modifying protein 1B / Q7LBR1* / charged multivesicular body protein 1B*ENSDARG0000009962452


Protein motifs (from Interpro)
Interpro ID Name
 IPR005024  Snf7 family
 IPR029888  Charged multivesicular body protein 1a


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007034 vacuolar transport IEA
 biological_processGO:0007076 mitotic chromosome condensation IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0000815 ESCRT III complex IEA
 cellular_componentGO:0016363 nuclear matrix IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000100 cerebellum cerebellum decreased volume , abnormal
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 ZFA:0000109 forebrain forebrain decreased volume , abnormal
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 ZFA:0000358 granular layer corpus cerebelli granular layer corpus cerebelli decreased size , abnormal
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 ZFA:0000394 molecular layer corpus cerebelli molecular layer corpus cerebelli decreased size , abnormal
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 ZFA:0000766 granular layer valvula cerebelli granular layer valvula cerebelli decreased size , abnormal
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 ZFA:0000913 molecular layer valvula cerebelli molecular layer valvula cerebelli decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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