ENSG00000132842


Homo sapiens

Features
Gene ID: ENSG00000132842
  
Biological name :AP3B1
  
Synonyms : adaptor related protein complex 3 beta 1 subunit / AP3B1 / O00203
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q14.1
Gene start: 78000525
Gene end: 78294755
  
Corresponding Affymetrix probe sets: 203141_s_at (Human Genome U133 Plus 2.0 Array)   203142_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000430597
Ensembl peptide - ENSP00000255194
Ensembl peptide - ENSP00000429228
NCBI entrez gene - 8546     See in Manteia.
OMIM - 603401
RefSeq - XM_017010001
RefSeq - NM_001271769
RefSeq - NM_003664
RefSeq - XM_005248618
RefSeq - XM_005248619
RefSeq Peptide - NP_003655
RefSeq Peptide - NP_001258698
swissprot - H0YBD0
swissprot - O00203
swissprot - A0A0S2Z5J4
Ensembl - ENSG00000132842
  
Related genetic diseases (OMIM): 608233 - Hermansky-Pudlak syndrome 2, 608233
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 AP3B1ENSDARG00000100082Danio rerio
 CU929160.1ENSDARG00000110056Danio rerio
 AP3B1ENSGALG00000004390Gallus gallus
 Ap3b1ENSMUSG00000021686Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AP3B2 / Q13367 / adaptor related protein complex 3 beta 2 subunitENSG0000010372361


Protein motifs (from Interpro)
Interpro ID Name
 IPR002553  Clathrin/coatomer adaptor, adaptin-like, N-terminal
 IPR011989  Armadillo-like helical
 IPR015151  Beta-adaptin appendage, C-terminal subdomain
 IPR016024  Armadillo-type fold
 IPR026739  AP complex subunit beta
 IPR026740  AP-3 complex subunit beta
 IPR029390  AP-3 complex subunit beta, C-terminal domain
 IPR029394  AP-3 complex subunit beta 1, serine-rich domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006622 protein targeting to lysosome IEA
 biological_processGO:0006886 intracellular protein transport TAS
 biological_processGO:0007596 blood coagulation IEA
 biological_processGO:0008089 anterograde axonal transport ISS
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0019882 antigen processing and presentation IEA
 biological_processGO:0032438 melanosome organization IMP
 biological_processGO:0048007 antigen processing and presentation, exogenous lipid antigen via MHC class Ib IEA
 biological_processGO:0048490 anterograde synaptic vesicle transport ISS
 biological_processGO:0051138 positive regulation of NK T cell differentiation IEA
 cellular_componentGO:0005765 lysosomal membrane HDA
 cellular_componentGO:0005794 Golgi apparatus TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030117 membrane coat IEA
 cellular_componentGO:0030123 AP-3 adaptor complex IEA
 cellular_componentGO:0030131 clathrin adaptor complex IEA
 cellular_componentGO:0030665 clathrin-coated vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:1904115 axon cytoplasm IEA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0019903 protein phosphatase binding IPI
 molecular_functionGO:0030742 GTP-dependent protein binding IPI


Pathways (from Reactome)
Pathway description
Golgi Associated Vesicle Biogenesis
Signaling by BRAF and RAF fusions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000219 Thin upper lip 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000280 Coarse facial features 
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 HP:0000319 Flat philtrum 
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 HP:0000343 Long philtrum 
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000670 Carious teeth 
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 HP:0000704 Periodontal disease 
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 HP:0001022 Albinism 
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 HP:0001107 Ocular albinism 
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001385 Hip dysplasia 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001873 Thrombocytopenia 
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 HP:0001875 Neutropenia 
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 HP:0002206 Pulmonary fibrosis 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002286 Light colored hair 
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 HP:0002718 Recurrent bacterial infections 
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 HP:0003577 Onset at birth 
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 HP:0007384 Aberrant melanosome maturation 
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 HP:0007663 Decreased central vision 
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 HP:0008807 Acetabular dysplasia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000132842 AP3B1 / O00203 / adaptor related protein complex 3 beta 1 subunit  / complex






 

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