ENSG00000133103


Homo sapiens

Features
Gene ID: ENSG00000133103
  
Biological name :COG6
  
Synonyms : COG6 / component of oligomeric golgi complex 6 / Q9Y2V7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 13
Strand: 1
Band: q14.11
Gene start: 39655627
Gene end: 39791665
  
Corresponding Affymetrix probe sets: 225769_at (Human Genome U133 Plus 2.0 Array)   232786_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000440473
Ensembl peptide - ENSP00000486051
Ensembl peptide - ENSP00000445217
Ensembl peptide - ENSP00000441297
Ensembl peptide - ENSP00000348983
Ensembl peptide - ENSP00000397441
Ensembl peptide - ENSP00000403733
Ensembl peptide - ENSP00000440438
NCBI entrez gene - 57511     See in Manteia.
OMIM - 606977
RefSeq - XM_011535168
RefSeq - NM_001145079
RefSeq - NM_020751
RefSeq Peptide - NP_001138551
RefSeq Peptide - NP_065802
swissprot - Q9Y2V7
swissprot - A0A140VJG7
swissprot - A0A024RDW5
swissprot - F5GX76
swissprot - F5GX38
swissprot - H0YGX8
Ensembl - ENSG00000133103
  
Related genetic diseases (OMIM): 614576 - Congenital disorder of glycosylation, type IIl, 614576
  615328 - Shaheen syndrome, 615328
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cog6ENSDARG00000103149Danio rerio
 COG6ENSGALG00000017035Gallus gallus
 Cog6ENSMUSG00000027742Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR010490  Conserved oligomeric Golgi complex subunit 6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport TAS
 biological_processGO:0006891 intra-Golgi vesicle-mediated transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0070085 glycosylation IMP
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0017119 Golgi transport complex IEA
 cellular_componentGO:0032588 trans-Golgi network membrane TAS
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
COPI-mediated anterograde transport
Intra-Golgi traffic
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000114 Proximal renal tubule defect 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000278 Retrognathia 
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 HP:0000670 Carious teeth 
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 HP:0000750 Impaired language development 
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 HP:0000966 Hypohidrosis "Abnormally diminished capacity to sweat." [HPO:curators]
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 HP:0000972 Palmoplantar hyperkeratosis "`Hyperkeratosis` (HP:0000962) affecting the palm of the hand and the sole of the foot." [HPO:probinson]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001403 Macrovesicular steatosis 
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 HP:0001413 Micronodular cirrhosis 
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 HP:0001508 Failure to thrive 
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 HP:0001522 Death in infancy 
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 HP:0002028 Chronic diarrhea 
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 HP:0002037 Inflammatory bowel disease 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002719 Recurrent infections 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0004313 Reduced immunoglobulin levels 
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 HP:0005435 Impaired T cell function 
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 HP:0006297 Hypoplastic dental enamel 
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 HP:0007185 Loss of consciousness 
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0012301 Type II transferrin isoform profile "Abnormal transferrin isoform profile consistent with a type II congenital disorder of glycosylation." [HPO:probinson, pmid:15105360]
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 HP:0100259 Postaxial polydactyly "A form of polydactyly in which the extra digit or digits are localized on the side of the fifth finger or fifth toe." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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