ENSG00000139629


Homo sapiens

Features
Gene ID: ENSG00000139629
  
Biological name :GALNT6
  
Synonyms : GALNT6 / polypeptide N-acetylgalactosaminyltransferase 6 / Q8NCL4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: q13.13
Gene start: 51351247
Gene end: 51392867
  
Corresponding Affymetrix probe sets: 219956_at (Human Genome U133 Plus 2.0 Array)   228303_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000474670
Ensembl peptide - ENSP00000474483
Ensembl peptide - ENSP00000474515
Ensembl peptide - ENSP00000348668
Ensembl peptide - ENSP00000444171
Ensembl peptide - ENSP00000473836
Ensembl peptide - ENSP00000473918
Ensembl peptide - ENSP00000473948
Ensembl peptide - ENSP00000473981
Ensembl peptide - ENSP00000474052
Ensembl peptide - ENSP00000474101
Ensembl peptide - ENSP00000474163
NCBI entrez gene - 11226     See in Manteia.
OMIM - 605148
RefSeq - XM_017018745
RefSeq - NM_007210
RefSeq - XM_005268607
RefSeq - XM_006719214
RefSeq - XM_011537819
RefSeq - XM_011537822
RefSeq - XM_017018744
RefSeq Peptide - NP_009141
swissprot - S4R3A9
swissprot - S4R3L4
swissprot - S4R3M3
swissprot - S4R3S5
swissprot - Q8NCL4
swissprot - S4R310
swissprot - S4R345
swissprot - S4R355
swissprot - S4R396
swissprot - S4R370
Ensembl - ENSG00000139629
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 galnt6ENSDARG00000014386Danio rerio
 GALNT6ENSGALG00000041101Gallus gallus
 Galnt6ENSMUSG00000037280Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GALNT3 / Q14435 / polypeptide N-acetylgalactosaminyltransferase 3ENSG0000011533965
GALNT4 / Q8N4A0 / polypeptide N-acetylgalactosaminyltransferase 4ENSG0000025759441
POC1B-GALNT4 / POC1B-GALNT4 readthroughENSG0000025907541
Q8IXK2 / GALNT12 / polypeptide N-acetylgalactosaminyltransferase 12ENSG0000011951441
Q8IUC8 / GALNT13 / polypeptide N-acetylgalactosaminyltransferase 13ENSG0000014427840
GALNT1 / Q10472 / polypeptide N-acetylgalactosaminyltransferase 1ENSG0000014142939
GALNT2 / Q10471 / polypeptide N-acetylgalactosaminyltransferase 2ENSG0000014364135
Q8N428 / GALNT16 / polypeptide N-acetylgalactosaminyltransferase 16ENSG0000010062635
Q8NCW6 / GALNT11 / polypeptide N-acetylgalactosaminyltransferase 11ENSG0000017823434
GALNT5 / Q7Z7M9 / polypeptide N-acetylgalactosaminyltransferase 5ENSG0000013654233
Q96FL9 / GALNT14 / polypeptide N-acetylgalactosaminyltransferase 14ENSG0000015808932
Q7Z4T8 / GALNTL5 / polypeptide N-acetylgalactosaminyltransferase like 5ENSG0000010664826


Protein motifs (from Interpro)
Interpro ID Name
 IPR000772  Ricin B, lectin domain
 IPR001173  Glycosyltransferase 2-like
 IPR029044  Nucleotide-diphospho-sugar transferases
 IPR035992  Ricin B-like lectins


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006486 protein glycosylation IEA
 biological_processGO:0006493 protein O-linked glycosylation TAS
 biological_processGO:0016266 O-glycan processing TAS
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 molecular_functionGO:0004653 polypeptide N-acetylgalactosaminyltransferase activity TAS
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0030246 carbohydrate binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
O-linked glycosylation of mucins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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