ENSG00000142186


Homo sapiens

Features
Gene ID: ENSG00000142186
  
Biological name :SCYL1
  
Synonyms : Q96KG9 / SCY1 like pseudokinase 1 / SCYL1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: 1
Band: q13.1
Gene start: 65525077
Gene end: 65538704
  
Corresponding Affymetrix probe sets: 223033_s_at (Human Genome U133 Plus 2.0 Array)   229601_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000431664
Ensembl peptide - ENSP00000431635
Ensembl peptide - ENSP00000432175
Ensembl peptide - ENSP00000437254
Ensembl peptide - ENSP00000436993
Ensembl peptide - ENSP00000433604
Ensembl peptide - ENSP00000270176
Ensembl peptide - ENSP00000279270
Ensembl peptide - ENSP00000408192
NCBI entrez gene - 57410     See in Manteia.
OMIM - 607982
RefSeq - XM_017018033
RefSeq - NM_001048218
RefSeq - NM_020680
RefSeq - XM_005274118
RefSeq - XM_005274120
RefSeq - XM_005274121
RefSeq - XM_017018029
RefSeq - XM_017018030
RefSeq - XM_017018031
RefSeq - XM_017018032
RefSeq Peptide - NP_001041683
RefSeq Peptide - NP_065731
swissprot - E9PK59
swissprot - H0YCI6
swissprot - E9PS17
swissprot - Q96KG9
swissprot - A0A0A0MQX4
swissprot - H0YDH0
swissprot - E9PPN3
Ensembl - ENSG00000142186
  
Related genetic diseases (OMIM): 616719 - Spinocerebellar ataxia, autosomal recessive 21, 616719
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scyl1ENSDARG00000079854Danio rerio
 Scyl1ENSMUSG00000024941Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SCYL3 / Q8IZE3 / SCY1 like pseudokinase 3ENSG0000000045719


Protein motifs (from Interpro)
Interpro ID Name
 IPR000719  Protein kinase domain
 IPR011009  Protein kinase-like domain superfamily
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006468 protein phosphorylation IEA
 biological_processGO:0006890 retrograde vesicle-mediated transport, Golgi to ER IDA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0018108 peptidyl-tyrosine phosphorylation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005793 endoplasmic reticulum-Golgi intermediate compartment IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005801 cis-Golgi network IDA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0030126 COPI vesicle coat IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0004672 protein kinase activity IEA
 molecular_functionGO:0004713 protein tyrosine kinase activity NAS
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0045296 cadherin binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000641 Dysmetric saccades 
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 HP:0000648 Optic atrophy 
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 HP:0001152 Saccadic smooth pursuit 
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001270 Motor retardation 
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 HP:0001272 Cerebellar atrophy 
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001395 Hepatic fibrosis 
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 HP:0001399 Hepatic failure 
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 HP:0001433 Hepatosplenomegaly 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001945 Fever 
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002073 Progressive cerebellar ataxia 
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 HP:0002080 Intention tremor "An oscillatory cerebellar ataxia that tends to be absent when the limbs are inactive and during the first part of voluntary movement but worsening as the movement continues and greater precision is required (e.g., in touching a target such as the patient s nose or a physician s finger)." [HPO:curators]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002359 Frequent falls 
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 HP:0002936 Distal sensory impairment 
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 HP:0003401 Paresthesia "Abnormal sensations such as tingling, pricking, or numbness of the skin with no apparent physical cause." [HPO:curators]
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 HP:0003474 Sensory impairment 
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 HP:0006554 Acute hepatic failure "Hepatic failure refers to the inability of the liver to perform its normal synthetic and metabolic functions, which can result in coagulopathy and alteration in the mental status of a previously healthy individual. Hepatic failure is defined as acute if there is onset of encephalopathy within 8 weeks of the onset of symptoms in a patient with a previously healthy liver." [HPO:curators]
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 HP:0006855 Cerebellar vermis atrophy 
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 HP:0007141 Sensorimotor neuropathy 
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 HP:0009053 Muscle weakness, lower limb, distal "Weakness of the distal muscles of the legs." [HPO:curators]
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 HP:0009055 Generalized limb muscle atrophy "Generalized atrophy affecting muscles of the limbs." [HPO:curators]
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 HP:0025268 Stuttering "Disruptions in the production of speech sounds, with involuntary repetitions of words or parts of words, prolongations of speech sounds, or complete blockage of speech production for several seconds." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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