ENSG00000142541


Homo sapiens

Features
Gene ID: ENSG00000142541
  
Biological name :RPL13A
  
Synonyms : P40429 / ribosomal protein L13a / RPL13A
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: q13.33
Gene start: 49487554
Gene end: 49492308
  
Corresponding Affymetrix probe sets: 200715_x_at (Human Genome U133 Plus 2.0 Array)   200716_x_at (Human Genome U133 Plus 2.0 Array)   210646_x_at (Human Genome U133 Plus 2.0 Array)   211942_x_at (Human Genome U133 Plus 2.0 Array)   212790_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000485546
Ensembl peptide - ENSP00000470037
Ensembl peptide - ENSP00000375730
Ensembl peptide - ENSP00000470768
Ensembl peptide - ENSP00000477755
NCBI entrez gene - 23521     See in Manteia.
RefSeq - NM_001270491
RefSeq - NM_012423
RefSeq Peptide - NP_001257420
RefSeq Peptide - NP_036555
swissprot - Q8J015
swissprot - A0A096LPE0
swissprot - M0QYS1
swissprot - M0QZU1
swissprot - P40429
Ensembl - ENSG00000142541
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpl13aENSDARG00000044093Danio rerio


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005755  Ribosomal protein L13, eukaryotic/archaeal
 IPR005822  Ribosomal protein L13
 IPR023563  Ribosomal protein L13, conserved site
 IPR036899  Ribosomal protein L13 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0006412 translation IEA
 biological_processGO:0006413 translational initiation TAS
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0006614 SRP-dependent cotranslational protein targeting to membrane TAS
 biological_processGO:0017148 negative regulation of translation IMP
 biological_processGO:0019083 viral transcription TAS
 biological_processGO:0071346 cellular response to interferon-gamma IDA
 biological_processGO:1901194 negative regulation of formation of translation preinitiation complex IDA
 cellular_componentGO:0005634 nucleus HDA
 cellular_componentGO:0005730 nucleolus HDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0005925 focal adhesion HDA
 cellular_componentGO:0015934 large ribosomal subunit IEA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit HDA
 cellular_componentGO:0097452 GAIT complex IDA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0003729 mRNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
Peptide chain elongation
SRP-dependent cotranslational protein targeting to membrane
Viral mRNA Translation
Selenocysteine synthesis
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Eukaryotic Translation Termination
Regulation of expression of SLITs and ROBOs
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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