ENSDARG00000044093


Danio rerio

Features
Gene ID: ENSDARG00000044093
  
Biological name :rpl13a
  
Synonyms : ribosomal protein L13a / rpl13a
  
Possible biological names infered from orthology : Gm45713 / P19253 / P40429 / Rpl13a-ps1
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 24615091
Gene end: 24618279
  
Corresponding Affymetrix probe sets: Dr.633.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000064738
swissprot - Q1LYB7
ZFIN ID - ZDB-GENE-030131-168
Ensembl - ENSDARG00000044093
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 P40429ENSG00000142541Homo sapiens
 Gm45713ENSMUSG00000089989Mus musculus
 P19253ENSMUSG00000074129Mus musculus
 Rpl13a-ps1ENSMUSG00000062083Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005755  Ribosomal protein L13, eukaryotic/archaeal
 IPR005822  Ribosomal protein L13
 IPR023563  Ribosomal protein L13, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IBA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0015934 large ribosomal subunit IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003729 mRNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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