ENSG00000143315


Homo sapiens

Features
Gene ID: ENSG00000143315
  
Biological name :PIGM
  
Synonyms : phosphatidylinositol glycan anchor biosynthesis class M / PIGM / Q9H3S5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: q23.2
Gene start: 160024953
Gene end: 160031991
  
Corresponding Affymetrix probe sets: 223470_at (Human Genome U133 Plus 2.0 Array)   235168_at (Human Genome U133 Plus 2.0 Array)   235532_at (Human Genome U133 Plus 2.0 Array)   236622_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000357069
NCBI entrez gene - 93183     See in Manteia.
OMIM - 610273
RefSeq - NM_145167
RefSeq Peptide - NP_660150
swissprot - Q9H3S5
Ensembl - ENSG00000143315
  
Related genetic diseases (OMIM): 610293 - Glycosylphosphatidylinositol deficiency, 610293
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pigmENSDARG00000024277Danio rerio
 PIGMENSGALG00000010768Gallus gallus
 PigmENSMUSG00000050229Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007704  Mannosyltransferase, DXD


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006506 GPI anchor biosynthetic process IEA
 biological_processGO:0016254 preassembly of GPI anchor in ER membrane TAS
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0016758 transferase activity, transferring hexosyl groups IEA


Pathways (from Reactome)
Pathway description
Synthesis of glycosylphosphatidylinositol (GPI)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001409 Portal hypertension 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0004936 Venous thrombosis 
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 HP:0030242 Portal vein thrombosis "Thrombosis of the portal vein and/or its tributaries, which include the splenic vein and the sup-erior and inferior mesenteric veins." [HPO:probinson, pmid:21960890]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000163964 PIGX / Q8TBF5 / phosphatidylinositol glycan anchor biosynthesis class X  / complex






 

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contact: otassy@igbmc.fr