ENSG00000145348


Homo sapiens

Features
Gene ID: ENSG00000145348
  
Biological name :TBCK
  
Synonyms : Q8TEA7 / TBC1 domain containing kinase / TBCK
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: -1
Band: q24
Gene start: 106041599
Gene end: 106321495
  
Corresponding Affymetrix probe sets: 226126_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000423092
Ensembl peptide - ENSP00000422160
Ensembl peptide - ENSP00000423637
Ensembl peptide - ENSP00000426093
Ensembl peptide - ENSP00000425197
Ensembl peptide - ENSP00000423834
Ensembl peptide - ENSP00000273980
Ensembl peptide - ENSP00000355338
Ensembl peptide - ENSP00000378196
Ensembl peptide - ENSP00000378198
Ensembl peptide - ENSP00000405847
Ensembl peptide - ENSP00000420985
Ensembl peptide - ENSP00000421182
NCBI entrez gene - 93627     See in Manteia.
OMIM - 616899
RefSeq - XM_017008849
RefSeq - NM_001163435
RefSeq - NM_001163436
RefSeq - NM_001163437
RefSeq - NM_001290768
RefSeq - NM_033115
RefSeq - XM_011532417
RefSeq - XM_017008846
RefSeq - XM_017008847
RefSeq - XM_017008848
RefSeq Peptide - NP_001156908
RefSeq Peptide - NP_001156909
RefSeq Peptide - NP_001277697
RefSeq Peptide - NP_149106
RefSeq Peptide - NP_001156907
swissprot - H0Y8U7
swissprot - H0Y959
swissprot - H0YA45
swissprot - Q8TEA7
swissprot - Q5HYF5
swissprot - D6R950
swissprot - D6RDY5
swissprot - D6RDG2
swissprot - D6RC61
Ensembl - ENSG00000145348
  
Related genetic diseases (OMIM): 616900 - Hypotonia, infantile, with psychomotor retardation and characteristic facies 3, 616900
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tbckENSDARG00000013667Danio rerio
 TBCKENSGALG00000010564Gallus gallus
 TbckENSMUSG00000028030Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8WUA7 / TBC1D22A / TBC1 domain family member 22AENSG0000005461112
Q9NU19 / TBC1D22B / TBC1 domain family member 22BENSG0000006549112


Protein motifs (from Interpro)
Interpro ID Name
 IPR000195  Rab-GTPase-TBC domain
 IPR000719  Protein kinase domain
 IPR001763  Rhodanese-like domain
 IPR011009  Protein kinase-like domain superfamily
 IPR035969  Rab-GTPase-TBC domain superfamily
 IPR036873  Rhodanese-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006468 protein phosphorylation IEA
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0008283 cell proliferation IMP
 biological_processGO:0030036 actin cytoskeleton organization IMP
 biological_processGO:0031338 regulation of vesicle fusion IBA
 biological_processGO:0032006 regulation of TOR signaling IMP
 biological_processGO:0090630 activation of GTPase activity IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005819 spindle IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0012505 endomembrane system IBA
 cellular_componentGO:0030496 midbody IEA
 cellular_componentGO:0072686 mitotic spindle IDA
 molecular_functionGO:0004672 protein kinase activity NAS
 molecular_functionGO:0005096 GTPase activator activity IBA
 molecular_functionGO:0005524 ATP binding NAS
 molecular_functionGO:0017137 Rab GTPase binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000158 Macroglossia "Increased length and width of the tongue." [pmid:19125428]
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 HP:0000212 Gingival hyperplasia 
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000280 Coarse facial features 
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000341 Narrow forehead "An abnormally reduced side-to-side width of the forehead." [HPO:curators]
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 HP:0000414 Bulbous nose 
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 HP:0000426 Prominent nasal bridge 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000490 Deep set eyes 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001265 Hyporeflexia 
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 HP:0001298 Encephalopathy 
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 HP:0001320 Cerebellar vermis hypoplasia 
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0002059 Cerebral atrophy 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002263 Exaggerated cupid s bow upper lip 
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 HP:0002376 Developmental regression 
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 HP:0002465 Poor speech 
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 HP:0002518 Periventricular white matter changes 
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 HP:0002553 Arched eyebrows 
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 HP:0003577 Onset at birth 
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 HP:0003828 Variable expressivity 
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 HP:0006829 Severe muscular hypotonia "A severe degree of muscular hypotonia characterized by markedly reduced muscle tone." [HPO:curators]
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 HP:0006989 Dysplastic corpus callosum 
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 HP:0010804 Tented upper lip vermilion "Triangular appearance of the oral aperture with the apex in the midpoint of the upper vermilion and the lower vermilion forming the base." [pmid:19125428]
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 HP:0011471 Gastrostomy tube feeding in infancy "Feeding problem necessitating gastrostomy tube feeding." [DDD:ncarter]
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 HP:0012444 Brain atrophy "Partial or complete wasting (loss) of brain tissue that was once present." [HPO:probinson]
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 HP:0012471 Thick vermilion border "Increased width of the "skin of vermilion border region of upper lip" (FMA:312645)." [HPO:probinson]
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 HP:0012510 Extra-axial cerebrospinal fluid accumulation "An increased amount of cerebrospinal fluid (CSF) in the subarachnoid space." [HPO:probinson, pmid:22327705, pmid:23838695]
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 HP:0012697 Small basal ganglia "Decreased size of the basal ganglia." [HPO:probinson]
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 HP:0012708 Reduced brain N-acetyl aspartate level by MRS "A decrease in the level of N-acetyl aspartate in the brain identified by magnetic resonance spectroscopy (MRS)." [UToronto:htrang]
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 HP:0012736 Profound global developmental delay "A profound delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
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 HP:0100704 Cortical visual impairment "A form of loss of vision caused by damage to the visual cortex rather than a defect in the eye." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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