ENSG00000147316


Homo sapiens

Features
Gene ID: ENSG00000147316
  
Biological name :MCPH1
  
Synonyms : MCPH1 / microcephalin 1 / Q8NEM0
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: 1
Band: p23.1
Gene start: 6406592
Gene end: 6648504
  
Corresponding Affymetrix probe sets: 1554155_at (Human Genome U133 Plus 2.0 Array)   1557347_at (Human Genome U133 Plus 2.0 Array)   219592_at (Human Genome U133 Plus 2.0 Array)   228778_at (Human Genome U133 Plus 2.0 Array)   232243_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000430768
Ensembl peptide - ENSP00000430962
Ensembl peptide - ENSP00000342924
NCBI entrez gene - 79648     See in Manteia.
OMIM - 607117
RefSeq - NM_001322045
RefSeq - NM_024596
RefSeq - XM_017013834
RefSeq - NM_001172574
RefSeq - NM_001172575
RefSeq - NM_001322042
RefSeq - NM_001322043
RefSeq - XM_011534758
RefSeq - XM_011534759
RefSeq - XM_017013829
RefSeq - XM_017013830
RefSeq - XM_017013831
RefSeq - XM_017013832
RefSeq - XM_017013833
RefSeq - XM_011534755
RefSeq - XM_011534756
RefSeq - XM_011534757
RefSeq Peptide - NP_001308974
RefSeq Peptide - NP_001308971
RefSeq Peptide - NP_001308972
RefSeq Peptide - NP_001166046
RefSeq Peptide - NP_078872
RefSeq Peptide - NP_001166045
swissprot - Q8NEM0
Ensembl - ENSG00000147316
  
Related genetic diseases (OMIM): 251200 - Microcephaly 1, primary, autosomal recessive, 251200
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 mcph1ENSDARG00000058372Danio rerio
 MCPH1ENSGALG00000016332Gallus gallus
 Mcph1ENSMUSG00000039842Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001357  BRCT domain
 IPR022047  Microcephalin-like
 IPR029504  Microcephalin, mammal
 IPR036420  BRCT domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0000132 establishment of mitotic spindle orientation IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0021987 cerebral cortex development IEA
 biological_processGO:0043549 regulation of kinase activity IEA
 biological_processGO:0046605 regulation of centrosome cycle IEA
 biological_processGO:0050727 regulation of inflammatory response IEA
 biological_processGO:0060348 bone development IEA
 biological_processGO:0060623 regulation of chromosome condensation IEA
 biological_processGO:0071539 protein localization to centrosome IEA
 biological_processGO:0071850 mitotic cell cycle arrest IDA
 biological_processGO:0097150 neuronal stem cell population maintenance IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
Condensation of Prophase Chromosomes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000122 Unilateral renal agenesis 
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 HP:0000219 Thin upper lip 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002282 Heterotopia 
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 HP:0002472 Small cerebral cortex 
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 HP:0003103 Abnormality of cortical bone "An abnormality of cortical bone (also known as compact bone), which forms the dense surface of bones." [HPO:curators]
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 HP:0003451 Premature chromosome condensation 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0007333 Hypoplastic frontal lobes "Underdevelopment of the frontal lobe of the cerebrum." [HPO:sdoelken]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000119335 SET / Q01105 / SET nuclear proto-oncogene  / reaction / complex






 

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