ENSG00000154153


Homo sapiens

Features
Gene ID: ENSG00000154153
  
Biological name :RETREG1
  
Synonyms : Q9H6L5 / reticulophagy regulator 1 / RETREG1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: p15.1
Gene start: 16473038
Gene end: 16617058
  
Corresponding Affymetrix probe sets: 218510_x_at (Human Genome U133 Plus 2.0 Array)   218532_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000304642
Ensembl peptide - ENSP00000382691
Ensembl peptide - ENSP00000425089
NCBI entrez gene - 54463     See in Manteia.
OMIM - 613114
RefSeq - XM_011514055
RefSeq - NM_001034850
RefSeq - NM_019000
RefSeq - XM_011514053
RefSeq - XM_011514054
RefSeq Peptide - NP_001030022
RefSeq Peptide - NP_061873
swissprot - Q9H6L5
swissprot - H0Y9U4
Ensembl - ENSG00000154153
  
Related genetic diseases (OMIM): 613115 - Neuropathy, hereditary sensory and autonomic, type IIB, 613115
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 retreg1ENSDARG00000079059Danio rerio
 RETREG1ENSGALG00000042679Gallus gallus
 Q8VE91ENSMUSG00000022270Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q86VR2 / RETREG3 / reticulophagy regulator family member 3ENSG0000014169931
Q8NC44 / RETREG2 / reticulophagy regulator family member 2ENSG0000014456725


Protein motifs (from Interpro)
Interpro ID Name
 IPR033358  Reticulophagy receptor 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0019233 sensory perception of pain IMP
 biological_processGO:0043524 negative regulation of neuron apoptotic process IEA
 biological_processGO:0061709 reticulophagy IMP
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005801 cis-Golgi network IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016604 nuclear body IDA
 cellular_componentGO:0030176 integral component of endoplasmic reticulum membrane IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000020 Urinary incontinence "Loss of the ability to control the urinary bladder leading to involuntary urination." [HPO:sdoelken]
Show

 HP:0000224 Decreased taste sensation 
Show

 HP:0000478 Abnormality of the eyes "Any abnormality of the `eyes` (FMA:54448), including location, spacing, and intraocular abnormalities." [HPO:curators]
Show

 HP:0000762 Decreased nerve conduction velocities 
Show

 HP:0000970 Anhidrosis "Inability to sweat." [HPO:curators]
Show

 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
Show

 HP:0001069 Hyperhidrosis, episodic 
Show

 HP:0001182 Tapered fingers 
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
Show

 HP:0001265 Hyporeflexia 
Show

 HP:0001284 Areflexia 
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001810 Dystrophic toenails 
Show

 HP:0001818 Paronychia "The nail disease paronychia is an often-tender bacterial or fungal hand infection or foot infection where the nail and skin meet at the side or the base of a finger or toenail. The infection can start suddenly (acute paronychia) or gradually (chronic paronychia)." [HPO:curators]
Show

 HP:0001842 Acroosteolysis (feet) 
Show

 HP:0001939 Metabolism abnormality 
Show

 HP:0002020 Gastroesophageal reflux 
Show

 HP:0002645 Wormian bones 
Show

 HP:0002661 Painless fractures due to injury "An increased tendency to fractures following trauma, with fractures occurring without pain." [HPO:curators]
Show

 HP:0002754 Osteomyelitis 
Show

 HP:0002815 Abnormality of the knees "An abnormality of the knee joint or surrounding structures." [HPO:curators]
Show

 HP:0003028 Abnormality of the ankles 
Show

 HP:0003103 Abnormality of cortical bone "An abnormality of cortical bone (also known as compact bone), which forms the dense surface of bones." [HPO:curators]
Show

 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
Show

 HP:0003272 Abnormality of the hip "An abnormality of the hip joint or the surrounding anatomic region." [HPO:curators]
Show

 HP:0003307 Hyperlordosis 
Show

 HP:0003380 Decreased number of myelinated fibers "A loss of myelinated nerve fibers (in general, this finding can be observed on nerve biopsy)." [HPO:curators]
Show

 HP:0003448 Decreased sensory nerve conduction velocities (NCV) 
Show

 HP:0003477 Axonal neuropathy 
Show

 HP:0003593 Early onset 
Show

 HP:0003621 Juvenile onset 
Show

 HP:0003676 Progressive disorder 
Show

 HP:0003677 Slow progression 
Show

 HP:0004349 Reduced bone mineral density "A reduction of bone mineral density, that is, of the amount of matter per cubic centimeter of bones." [HPO:curators]
Show

 HP:0005930 Abnormality of the epiphyses 
Show

 HP:0006121 Acral ulceration leading to autoamputation of digits 
Show

 HP:0008391 Mildly dystrophic fingernails 
Show

 HP:0008872 Feeding problems in infancy 
Show

 HP:0009771 Osteolytic defects of the phalanges of the hand "Dissolution or degeneration of bone tissue of the phalanges of the hand." [HPO:curators]
Show

 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr