ENSG00000154803


Homo sapiens

Features
Gene ID: ENSG00000154803
  
Biological name :FLCN
  
Synonyms : FLCN / folliculin / Q8NFG4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: p11.2
Gene start: 17212212
Gene end: 17237188
  
Corresponding Affymetrix probe sets: 1552664_at (Human Genome U133 Plus 2.0 Array)   215645_at (Human Genome U133 Plus 2.0 Array)   235250_at (Human Genome U133 Plus 2.0 Array)   243062_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000410410
Ensembl peptide - ENSP00000463970
Ensembl peptide - ENSP00000285071
Ensembl peptide - ENSP00000373821
NCBI entrez gene - 201163     See in Manteia.
OMIM - 607273
RefSeq - XM_017024309
RefSeq - XM_011523718
RefSeq - XM_011523719
RefSeq - XM_011523721
RefSeq - XM_017024304
RefSeq - XM_017024305
RefSeq - XM_017024306
RefSeq - XM_017024307
RefSeq - XM_017024308
RefSeq - NM_144606
RefSeq - NM_144997
RefSeq - XM_011523714
RefSeq - XM_011523716
RefSeq Peptide - NP_659434
RefSeq Peptide - NP_001340159
RefSeq Peptide - NP_001340160
RefSeq Peptide - NP_653207
swissprot - C9J4C4
swissprot - J3QQZ7
swissprot - Q8NFG4
swissprot - A0A0S2Z5Y7
Ensembl - ENSG00000154803
  
Related genetic diseases (OMIM): 114500 - Colorectal cancer, somatic, 114500
  135150 - Birt-Hogg-Dube syndrome, 135150
  144700 - Renal carcinoma, chromophobe, somatic, 144700
  173600 - Pneumothorax, primary spontaneous, 173600
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 flcnENSDARG00000062385Danio rerio
 ENSGALG00000004816Gallus gallus
 FlcnENSMUSG00000032633Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AC055811.2ENSG0000026418712


Protein motifs (from Interpro)
Interpro ID Name
 IPR021713  Folliculin
 IPR032035  Folliculin, C-terminal
 IPR037520  Folliculin, N-terminal
 IPR037521  Folliculin/SMCR8, tripartite DENN domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IMP
 biological_processGO:0001701 in utero embryonic development ISS
 biological_processGO:0001932 regulation of protein phosphorylation IDA
 biological_processGO:0001934 positive regulation of protein phosphorylation ISS
 biological_processGO:0007043 cell-cell junction assembly ISS
 biological_processGO:0010508 positive regulation of autophagy IMP
 biological_processGO:0010629 negative regulation of gene expression ISS
 biological_processGO:0010823 negative regulation of mitochondrion organization ISS
 biological_processGO:0030097 hemopoiesis ISS
 biological_processGO:0030308 negative regulation of cell growth IDA
 biological_processGO:0030336 negative regulation of cell migration IMP
 biological_processGO:0030511 positive regulation of transforming growth factor beta receptor signaling pathway ISS
 biological_processGO:0031929 TOR signaling IMP
 biological_processGO:0032006 regulation of TOR signaling ISS
 biological_processGO:0032007 negative regulation of TOR signaling ISS
 biological_processGO:0032008 positive regulation of TOR signaling ISS
 biological_processGO:0032465 regulation of cytokinesis IMP
 biological_processGO:0035024 negative regulation of Rho protein signal transduction IMP
 biological_processGO:0035065 regulation of histone acetylation ISS
 biological_processGO:0043065 positive regulation of apoptotic process ISS
 biological_processGO:0045785 positive regulation of cell adhesion IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IMP
 biological_processGO:0051898 negative regulation of protein kinase B signaling ISS
 biological_processGO:0065009 regulation of molecular function IEA
 biological_processGO:0070373 negative regulation of ERK1 and ERK2 cascade ISS
 biological_processGO:1900181 negative regulation of protein localization to nucleus IDA
 biological_processGO:1901723 negative regulation of cell proliferation involved in kidney development ISS
 biological_processGO:2000973 regulation of pro-B cell differentiation ISS
 biological_processGO:2001170 negative regulation of ATP biosynthetic process ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005764 lysosome TAS
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0005929 cilium TAS
 cellular_componentGO:0030496 midbody IDA
 cellular_componentGO:0044291 cell-cell contact zone IDA
 molecular_functionGO:0005085 guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0044877 protein-containing complex binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000107 Renal cysts 
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 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000243 Trigonocephaly 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000319 Flat philtrum 
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 HP:0000325 Triangular facies 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000540 Hypermetropia 
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 HP:0000678 Dental overcrowding 
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 HP:0000689 Dental malocclusion "Dental malocclusion refers to an abnormality of the occlusion, or alignment, of the teeth and the way the upper and lower teeth fit together, resulting in overcrowding of teeth or in abnormal bite patterns." [HPO:curators]
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 HP:0000717 Autism 
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 HP:0000733 Stereotyped, repetitive behaviour 
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 HP:0000752 Hyperactivity 
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 HP:0000817 Poor eye contact 
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 HP:0000821 Hypothyroidism 
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 HP:0001012 Lipomas "The presence of multiple lipomas (a type of benign tissue made of fatty tissue)." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001438 Abnormality of the abdomen "Abnormality of the abdomen ("belly"), that is, the part of the body between the pelvis and the thorax." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001518 Low birth weight 
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 HP:0001595 Hair abnormality 
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 HP:0001626 Abnormality of the cardiovascular system "Any abnormality of the heart or vasculature." [HPO:curators]
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 HP:0001655 Patent foramen ovale 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002097 Emphysema 
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 HP:0002103 Abnormality of the pleura "An abnormality of the pleura, the thin, transparent membrane which covers the lungs and lines the inside of the chest walls." [HPO:curators]
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 HP:0002107 Pneumothorax 
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 HP:0002108 Spontaneous pneumothorax 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002357 Dysphasia 
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 HP:0002463 Language impairment 
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 HP:0002474 Expressive language delay 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002865 Medullary thyroid carcinoma 
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 HP:0002891 Uterine leiomyosarcoma 
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 HP:0002897 Parathyroid adenoma 
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 HP:0003146 Hypocholesterolemia 
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 HP:0003745 Sporadic 
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 HP:0003812 Phenotypic variability 
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 HP:0003829 Incomplete penetrance 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005274 Prominent nasal tip 
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 HP:0005584 Renal cell carcinoma "Renal cell carcinoma (also known as hypernephroma) is the most common form of kidney cancer arising from the proximal renal tubule. The tissue of origin for renal cell carcinoma is the proximal renal tubular epithelium. Renal cell carcinoma can be classified as 1) clear cell carcinoma, 2) papillary carcinoma, 3) chromophobe renal carcinoma, and 4) collecting duct carcinoma." [HPO:curators]
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 HP:0006716 Hereditary nonpolyposis colorectal carcinoma 
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 HP:0006740 Transitional cell carcinoma of the bladder 
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 HP:0006753 Increased gastric cancer 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008872 Feeding problems in infancy 
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 HP:0009726 Renal neoplasia "Tumors, malignant or benign, originating in the kidney." [HPO:curators]
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 HP:0010529 Echolalia "The tendency to repeat vocalizations made by another person." [HPO:curators]
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 HP:0010535 Sleep apnea "An intermittent cessation of airflow at the mouth and nose during sleep. Apneas of at least 10 seconds are considered important, but persons with sleep apnea may have apneas of 20 seconds to up to 2 or 3 minutes. Patients may have up to 15 events per hour of sleep." [HPO:curators]
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 HP:0010609 Skin tags 
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 HP:0010863 Receptive language delay "A kind of `language delay` (HP:0002336) characterized by a delay primarily in the acquisition of the ability to understand the speech of others." [HPO:probinson]
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 HP:0012210 Abnormal renal morphology "Any structural anomaly of the `kidney` (FMA:7203)." [HPO:probinson]
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 HP:0012448 Delayed myelination "`Delayed` (PATO:0000502) `myelination` (GO:0042552)." [ORCID:0000-0001-5208-3432]
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 HP:0030436 Fibrofolliculoma "Fibrofolliculoma is a clinically asymptomatic, 2-4 mm, skin-colored, dome-shaped smooth papule. It usually arises in the form of multiple lesions in adults in different areas such as the scalp, forehead, face, and neck. According to histology, the lesion is a fibrotic hamartoma characterized by infundibular epithelial proliferation and perifollicular fibrous proliferation." [HPO:probinson, pmid:17804924]
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 HP:0100632 Pulmonary sequestration "The presence of a piece lung tissue which is not attached to the pulmonary blood supply and does not communicate with the other lung tissue (not connected to the standard bronchial airways and not performing a function in respiration)." [HPO:sdoelken]
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 HP:0200034 skin papules "A circumscribed, solid elevation of skin with no visible fluid, varying in size from a pinhead to less than 10mm in diameter at the widest point." [HPO:SKOEHLER]
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 HP:0200136 Oral-pharyngeal dysphagia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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