ENSG00000160208


Homo sapiens

Features
Gene ID: ENSG00000160208
  
Biological name :RRP1B
  
Synonyms : Q14684 / ribosomal RNA processing 1B / RRP1B
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 21
Strand: 1
Band: q22.3
Gene start: 43659548
Gene end: 43696079
  
Corresponding Affymetrix probe sets: 212844_at (Human Genome U133 Plus 2.0 Array)   212846_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000339145
NCBI entrez gene - 23076     See in Manteia.
OMIM - 610654
RefSeq - NM_015056
RefSeq Peptide - NP_055871
swissprot - Q14684
Ensembl - ENSG00000160208
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rrp1ENSDARG00000103337Danio rerio
 RRP1BENSGALG00000035696Gallus gallus
 Rrp1bENSMUSG00000058392Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RRP1 / P56182 / ribosomal RNA processing 1ENSG0000016021428


Protein motifs (from Interpro)
Interpro ID Name
 IPR010301  Nucleolar, Nop52


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006364 rRNA processing IBA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0010923 negative regulation of phosphatase activity IDA
 biological_processGO:0034260 negative regulation of GTPase activity IEA
 biological_processGO:0043065 positive regulation of apoptotic process IMP
 biological_processGO:0043484 regulation of RNA splicing IEA
 biological_processGO:0043923 positive regulation by host of viral transcription IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IMP
 biological_processGO:0098586 cellular response to virus IDA
 cellular_componentGO:0000791 euchromatin IEA
 cellular_componentGO:0000792 heterochromatin IEA
 cellular_componentGO:0001652 granular component IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005829 cytosol HDA
 cellular_componentGO:0030687 preribosome, large subunit precursor IBA
 cellular_componentGO:0030688 preribosome, small subunit precursor IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr