ENSG00000160299


Homo sapiens

Features
Gene ID: ENSG00000160299
  
Biological name :PCNT
  
Synonyms : O95613 / PCNT / pericentrin
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 21
Strand: 1
Band: q22.3
Gene start: 46324122
Gene end: 46445769
  
Corresponding Affymetrix probe sets: 203660_s_at (Human Genome U133 Plus 2.0 Array)   233387_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000352572
Ensembl peptide - ENSP00000404708
NCBI entrez gene - 5116     See in Manteia.
OMIM - 605925
RefSeq - XM_017028363
RefSeq - NM_001315529
RefSeq - NM_006031
RefSeq - XM_005261124
RefSeq - XM_011529594
RefSeq - XM_017028362
RefSeq Peptide - NP_001302458
RefSeq Peptide - NP_006022
swissprot - H7C2A3
swissprot - O95613
Ensembl - ENSG00000160299
  
Related genetic diseases (OMIM): 210720 - Microcephalic osteodysplastic primordial dwarfism, type II, 210720
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcntENSDARG00000033012Danio rerio
 PCNTENSGALG00000007021Gallus gallus
 PcntENSMUSG00000001151Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AKAP9 / Q99996 / A-kinase anchoring protein 9ENSG0000012791422


Protein motifs (from Interpro)
Interpro ID Name
 IPR019528  Pericentrin/AKAP-450 centrosomal targeting domain
 IPR028745  A-kinase anchor protein 9/Pericentrin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000086 G2/M transition of mitotic cell cycle TAS
 biological_processGO:0000226 microtubule cytoskeleton organization IMP
 biological_processGO:0007052 mitotic spindle organization IMP
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0010389 regulation of G2/M transition of mitotic cell cycle TAS
 biological_processGO:0060271 cilium assembly IDA
 biological_processGO:0090316 positive regulation of intracellular protein transport IMP
 biological_processGO:0097711 ciliary basal body-plasma membrane docking TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005814 centriole IDA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0034451 centriolar satellite IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005516 calmodulin binding IEA
 molecular_functionGO:0032947 protein-containing complex scaffold activity IEA


Pathways (from Reactome)
Pathway description
Regulation of PLK1 Activity at G2/M Transition
Loss of Nlp from mitotic centrosomes
Recruitment of mitotic centrosome proteins and complexes
Loss of proteins required for interphase microtubule organization from the centrosome
Recruitment of NuMA to mitotic centrosomes
Anchoring of the basal body to the plasma membrane
AURKA Activation by TPX2


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
Show

 HP:0000055 Abnormality of female external genitalia 
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000275 Narrow face 
Show

 HP:0000278 Retrognathia 
Show

 HP:0000293 Full cheeks 
Show

 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
Show

 HP:0000387 Lobeless ears 
Show

 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
Show

 HP:0000426 Prominent nasal bridge 
Show

 HP:0000430 Hypoplastic nasal alae "Thinned, deficient, or excessively arched `ala nasi` (FMA:59519)." [pmid:19152422]
Show

 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
Show

 HP:0000444 Beaked nose 
Show

 HP:0000448 Prominent nose 
Show

 HP:0000494 Downward slanting palpebral fissures 
Show

 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
Show

 HP:0000540 Hypermetropia 
Show

 HP:0000582 Upslanting palpebral fissures 
Show

 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
Show

 HP:0000691 Microdontia 
Show

 HP:0000774 Narrow chest 
Show

 HP:0000826 Precocious puberty "The onset of secondary sexual characteristics before a normal age. Although it is difficult to define normal age ranges because of the marked variation with which puberty begins in normal children, precocious puberty can be defined as the onset of puberty before the age of 8 years in girls or 9 years in boys." [HPO:curators]
Show

 HP:0000882 Hypoplastic scapulae 
Show

 HP:0000890 Long clavicles 
Show

 HP:0000944 Abnormality of the metaphyses 
Show

 HP:0000957 Cafe-au-lait spots 
Show

 HP:0000958 Dry skin 
Show

 HP:0001053 Hypopigmented skin patches 
Show

 HP:0001156 Brachydactyly 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001297 Stroke 
Show

 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
Show

 HP:0001377 Limited elbow extension 
Show

 HP:0001385 Hip dysplasia 
Show

 HP:0001511 Intrauterine growth retardation 
Show

 HP:0001601 Laryngomalacia 
Show

 HP:0001611 Nasal speech 
Show

 HP:0001620 High pitched voice 
Show

 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
Show

 HP:0001643 Patent ductus arteriosus 
Show

 HP:0001852 Gap between first and second toes "The presence of a larger than normal gap between the first and second toes related to medial displacement of the first toe." [HPO:curators]
Show

 HP:0001903 Anemia 
Show

 HP:0001956 Truncal obesity "Obesity located preferentially in the trunk of the body as opposed to the extremities." [HPO:curators]
Show

 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
Show

 HP:0002119 Ventriculomegaly 
Show

 HP:0002205 Recurrent respiratory infections 
Show

 HP:0002209 Sparse scalp hair "Sparseness of the `head hair` (FMA:54241)." [HPO:probinson]
Show

 HP:0002213 Fine hair 
Show

 HP:0002617 Aneurysm 
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002690 Large sella turcica "An abnormal enlargement of the sella turcica." [HPO:curators]
Show

 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
Show

 HP:0002777 Tracheal stenosis 
Show

 HP:0002812 Coxa vara 
Show

 HP:0002866 Hypoplastic iliac wings 
Show

 HP:0002982 Tibial bowing "A developmental defect with posteromedial tibial angulation." [HPO:curators]
Show

 HP:0002983 Micromelia 
Show

 HP:0002986 Radial bowing 
Show

 HP:0003015 Metaphyseal flaring "The presence of splayed (i.e.,flared) metaphyseal segments of the long bones." [HPO:curators]
Show

 HP:0003031 Ulnar bowing "Bending of the diaphysis (shaft) of the ulna, usually in the convex posterior direction." [HPO:curators]
Show

 HP:0003100 Thin long bones 
Show

 HP:0003275 Narrow pelvis 
Show

 HP:0003498 Short stature, disproportionate 
Show

 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004326 Cachexia 
Show

 HP:0004944 Cerebral aneurysm "The presence of a localized dilatation or ballooning of a cerebral artery." [HPO:curators]
Show

 HP:0005692 Joint hyperflexibility 
Show

 HP:0005819 Abnormally short and broad middle phalanges 
Show

 HP:0005930 Abnormality of the epiphyses 
Show

 HP:0005978 Noninsulin-dependent diabetes mellitus 
Show

 HP:0006297 Hypoplastic dental enamel 
Show

 HP:0006461 Proximal femoral epiphysiolysis "Slipped capital femoral epiphysis is defined as a posterior and inferior slippage of the proximal femoral epiphysis on the metaphysis (femoral neck), occurring through the physeal plate during the early adolescent growth spurt." [HPO:curators]
Show

 HP:0006587 Long, straight clavicles 
Show

 HP:0006645 Thin, long clavicles 
Show

 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
Show

 HP:0007402 Areas of hypopigmentation and hyperpigmentation that do not follow Blaschko lines 
Show

 HP:0007495 Prematurely aged appearance 
Show

 HP:0007565 Multiple cafe-au-lait spots 
Show

 HP:0008551 Underdeveloped ears 
Show

 HP:0008897 Growth retardation, progressive 
Show

 HP:0009193 Pseudoepiphyses of the metacarpals "A pseudoepiphysis is a secondary ossification center distinct from the normal epiphysis. The normal metacarpal epiphyses are located at the distal ends of the metacarpal bones. Accessory epiphyses (which are also known as pseudoepiphyses) can also occasionally be observed at the proximal ends of the metacarpals, usually involving the 2nd metacarpal bone." [HPO:doelkens]
Show

 HP:0009804 Reduced number of teeth 
Show

 HP:0009882 Hypoplasia of the distal phalanges of the hand 
Show

 HP:0009906 Aplasia/Hypoplasia of the earlobes "Absence or underdevelopment of the ear lobes." [HPO:curators]
Show

 HP:0010034 Hypoplastic/short 1st metacarpal "In contrast to the proximal phalanges of the digits 2-5, the proximal phalanx of the thumb is embryologically equivalent to the middle phalanges of the other digits, whereas the first metacarpal is embryologically of phalangeal origin and as such equivalent to the proximal phalanges of the other digits." [HPO:curators]
Show

 HP:0010579 Cone-shaped epiphyses 
Show

 HP:0010583 Ivory epiphyses 
Show

 HP:0011342 Mild global developmental delay "A mild delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
Show

 HP:0011834 Moyamoya phenomenon "A noninflammatory, progressive occlusion of the intracranial carotid arteries owing to the formation of netlike collateral arteries arising from the circle of Willis." [HPO:probinson]
Show

 HP:0045025 Small palpebral fissure 
Show

 HP:0100263 Distal symphalangism 
Show

 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
Show

 HP:0100545 Arterial stenosis 
Show

 HP:0100840 Aplasia/Hypoplasia of the eyebrow "Absence or underdevelopment of the eyebrow." [HPO:probinson]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr