ENSG00000161395


Homo sapiens

Features
Gene ID: ENSG00000161395
  
Biological name :PGAP3
  
Synonyms : PGAP3 / post-GPI attachment to proteins 3 / Q96FM1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: q12
Gene start: 39671122
Gene end: 39696797
  
Corresponding Affymetrix probe sets: 221811_at (Human Genome U133 Plus 2.0 Array)   55616_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000464308
Ensembl peptide - ENSP00000463785
Ensembl peptide - ENSP00000478028
Ensembl peptide - ENSP00000300658
Ensembl peptide - ENSP00000367250
Ensembl peptide - ENSP00000415765
Ensembl peptide - ENSP00000463011
Ensembl peptide - ENSP00000463234
NCBI entrez gene - 93210     See in Manteia.
OMIM - 611801
RefSeq - XM_011525481
RefSeq - NM_001291726
RefSeq - NM_001291728
RefSeq - NM_001291730
RefSeq - NM_001291732
RefSeq - NM_001291733
RefSeq - NM_033419
RefSeq - XM_011525480
RefSeq Peptide - NP_219487
RefSeq Peptide - NP_001278655
RefSeq Peptide - NP_001278657
RefSeq Peptide - NP_001278659
RefSeq Peptide - NP_001278661
RefSeq Peptide - NP_001278662
swissprot - J3QKU0
swissprot - Q96FM1
swissprot - A0A087WTP0
swissprot - J3QQL0
swissprot - J3QRN7
swissprot - J3KTJ2
Ensembl - ENSG00000161395
  
Related genetic diseases (OMIM): 615716 - Hyperphosphatasia with mental retardation syndrome 4, 615716
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pgap3ENSDARG00000057531Danio rerio
 PGAP3ENSGALG00000022030Gallus gallus
 Pgap3ENSMUSG00000038208Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007217  Per1-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006505 GPI anchor metabolic process IMP
 biological_processGO:0006506 GPI anchor biosynthetic process IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031227 intrinsic component of endoplasmic reticulum membrane IDA
 molecular_functionGO:0016788 hydrolase activity, acting on ester bonds IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000219 Thin upper lip 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000455 Broad nasal tip 
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001510 Growth retardation 
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 HP:0002540 Inability to walk 
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 HP:0003155 Elevated alkaline phosphatase "Abnormally increased serum levels of `alkaline phosphatase activity` (GO:0004035)." [HPO:probinson]
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 HP:0003593 Early onset 
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 HP:0003763 Bruxism 
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 HP:0004305 Involuntary muscle contractions 
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 HP:0010804 Tented upper lip vermilion "Triangular appearance of the oral aperture with the apex in the midpoint of the upper vermilion and the lower vermilion forming the base." [pmid:19125428]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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