ENSG00000163069


Homo sapiens

Features
Gene ID: ENSG00000163069
  
Biological name :SGCB
  
Synonyms : Q16585 / sarcoglycan beta / SGCB
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: -1
Band: q12
Gene start: 52020706
Gene end: 52038482
  
Corresponding Affymetrix probe sets: 205120_s_at (Human Genome U133 Plus 2.0 Array)   205121_at (Human Genome U133 Plus 2.0 Array)   226112_at (Human Genome U133 Plus 2.0 Array)   228584_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000425818
Ensembl peptide - ENSP00000370839
Ensembl peptide - ENSP00000421235
NCBI entrez gene - 6443     See in Manteia.
OMIM - 600900
RefSeq - NM_000232
RefSeq Peptide - NP_000223
swissprot - Q5U0N0
swissprot - H0Y8J3
swissprot - H0YA15
swissprot - Q16585
Ensembl - ENSG00000163069
  
Related genetic diseases (OMIM): 604286 - Muscular dystrophy, limb-girdle, type 2E, 604286
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sgcbENSDARG00000052341Danio rerio
 SGCBENSGALG00000013968Gallus gallus
 SgcbENSMUSG00000029156Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006875  Sarcoglycan complex subunit protein
 IPR027659  Beta-sarcoglycan


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007517 muscle organ development IEA
 biological_processGO:0048747 muscle fiber development IEA
 biological_processGO:0055013 cardiac muscle cell development IEA
 biological_processGO:0061024 membrane organization IBA
 biological_processGO:0097084 vascular smooth muscle cell development IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0016010 dystrophin-associated glycoprotein complex IDA
 cellular_componentGO:0016011 dystroglycan complex IEA
 cellular_componentGO:0016012 sarcoglycan complex IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0042383 sarcolemma IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0001644 Dilated cardiomyopathy 
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003325 Limb-girdle muscle weakness "Weakness of the limb-girdle muscles (also known as the pelvic and shoulder girdles), that is, lack of strength of the muscles around the shoulders and the pelvis." [HPO:curators]
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 HP:0003560 Muscular dystrophy "The term dystrophy means abnormal growth. However, muscular dystrophy is used to describe primary myopathies with a genetic basis and a progressive course characterized by progressive skeletal muscle weakness, defects in muscle proteins, and the apoptosis of muscle cells." [HPO:curators]
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 HP:0003621 Juvenile onset 
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 HP:0003691 Scapular winging 
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 HP:0003707 Calf muscle pseudohypertrophy 
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 HP:0003724 Shoulder girdle muscle atrophy "Amyotrophy affecting the muscles of the shoulder girdle." [HPO:curators]
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 HP:0007126 Proximal amyotrophy "Amyotrophy (muscular atrophy) affecting the proximal musculature." [HPO:curators]
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 HP:0008988 Pelvic girdle muscle atrophy "Muscular atrophy affecting the muscles that attach to the pelvic girdle (the gluteal muscles, the lateral rotators, adductor magnus, adductor brevis, adductor longus, pectineus, and gracilis muscles)." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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