ENSG00000163682


Homo sapiens

Features
Gene ID: ENSG00000163682
  
Biological name :RPL9
  
Synonyms : P32969 / ribosomal protein L9 / RPL9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: -1
Band: p14
Gene start: 39452521
Gene end: 39458949
  
Corresponding Affymetrix probe sets: 200032_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000424796
Ensembl peptide - ENSP00000425250
Ensembl peptide - ENSP00000494836
Ensembl peptide - ENSP00000494697
Ensembl peptide - ENSP00000346022
Ensembl peptide - ENSP00000400467
Ensembl peptide - ENSP00000421872
Ensembl peptide - ENSP00000422191
NCBI entrez gene - 6133     See in Manteia.
OMIM - 603686
RefSeq - NM_000661
RefSeq - NM_001024921
RefSeq Peptide - NP_000652
RefSeq Peptide - NP_001020092
swissprot - P32969
swissprot - E7ESE0
swissprot - Q53Z07
swissprot - D6RAN4
swissprot - H0Y9R4
swissprot - H0Y9V9
Ensembl - ENSG00000163682
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CR759875.5ENSDARG00000116939Danio rerio
 RPL9ENSGALG00000000150Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000702  Ribosomal protein L6
 IPR002359  Ribosomal protein L6, conserved site-2
 IPR020040  Ribosomal protein L6, alpha-beta domain
 IPR036789  Ribosomal protein L6, alpha-beta domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0006412 translation IEA
 biological_processGO:0006413 translational initiation TAS
 biological_processGO:0006614 SRP-dependent cotranslational protein targeting to membrane TAS
 biological_processGO:0019083 viral transcription TAS
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus HDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0005925 focal adhesion HDA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit HDA
 molecular_functionGO:0003723 RNA binding TAS
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019843 rRNA binding IEA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
Peptide chain elongation
SRP-dependent cotranslational protein targeting to membrane
Viral mRNA Translation
Selenocysteine synthesis
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Eukaryotic Translation Termination
Regulation of expression of SLITs and ROBOs
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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