ENSGALG00000000150


Gallus gallus

Features
Gene ID: ENSGALG00000000150
  
Biological name :RPL9
  
Synonyms : ribosomal protein L9 / RPL9
  
Possible biological names infered from orthology : P32969 / P51410 / Rpl9-ps1 / Rpl9-ps6
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 69714760
Gene end: 69756162
  
Corresponding Affymetrix probe sets: Gga.11486.1.S1_at (Chicken Array)   Gga.13605.1.A1_at (Chicken Array)   Gga.4776.1.S1_a_at (Chicken Array)   Gga.4776.1.S2_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044356
Ensembl peptide - ENSGALP00000064710
Ensembl peptide - ENSGALP00000060047
Ensembl peptide - ENSGALP00000000205
NCBI entrez gene - 425468     See in Manteia.
RefSeq - NM_001257333
RefSeq Peptide - NP_001244262
swissprot - A0A1L1S0Q8
swissprot - A0A1D5NVI1
swissprot - F1NS91
Ensembl - ENSGALG00000000150
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CR759875.5ENSDARG00000116939Danio rerio
 RPL9ENSG00000163682Homo sapiens
 Rpl9ENSMUSG00000047215Mus musculus
 Rpl9-ps1ENSMUSG00000081906Mus musculus
 Rpl9-ps6ENSMUSG00000062456Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000702  Ribosomal protein L6
 IPR002359  Ribosomal protein L6, conserved site-2
 IPR020040  Ribosomal protein L6, alpha-beta domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0019843 rRNA binding IEA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr