ENSG00000163755


Homo sapiens

Features
Gene ID: ENSG00000163755
  
Biological name :HPS3
  
Synonyms : HPS3 / HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 / Q969F9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: q24
Gene start: 149129584
Gene end: 149173732
  
Corresponding Affymetrix probe sets: 227139_s_at (Human Genome U133 Plus 2.0 Array)   231121_at (Human Genome U133 Plus 2.0 Array)   238539_at (Human Genome U133 Plus 2.0 Array)   241036_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000296051
Ensembl peptide - ENSP00000418230
Ensembl peptide - ENSP00000419824
NCBI entrez gene - 84343     See in Manteia.
OMIM - 606118
RefSeq - XM_017007323
RefSeq - NM_001308258
RefSeq - NM_032383
RefSeq - XM_005247834
RefSeq Peptide - NP_001295187
RefSeq Peptide - NP_115759
swissprot - H7C5G2
swissprot - Q969F9
swissprot - G5E9V4
Ensembl - ENSG00000163755
  
Related genetic diseases (OMIM): 614072 - Hermansky-Pudlak syndrome 3, 614072
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hps3ENSDARG00000015749Danio rerio
 HPS3ENSGALG00000040089Gallus gallus
 Hps3ENSMUSG00000027615Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR017216  Hermansky-Pudlak syndrome 3 protein
 IPR028167  Hermansky-Pudlak syndrome 3, central region
 IPR029437  Hermansky-Pudlak syndrome 3 protein, N-terminal domain
 IPR029438  Hermansky-Pudlak syndrome 3 protein, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006996 organelle organization IEA
 biological_processGO:0043473 pigmentation IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0031084 BLOC-2 complex IPI
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0001892 Bleeding diathesis "An abnormal susceptibility to bleeding because of a defect in coagulation." [HPO:curators]
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 HP:0011883 Abnormal platelet granules "An anomaly of alpha or dense granules or platelet lysososmes." [DDD:wouwehand]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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