ENSG00000164609


Homo sapiens

Features
Gene ID: ENSG00000164609
  
Biological name :SLU7
  
Synonyms : O95391 / SLU7 / SLU7 homolog, splicing factor
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q33.3
Gene start: 160401641
Gene end: 160421711
  
Corresponding Affymetrix probe sets: 227990_at (Human Genome U133 Plus 2.0 Array)   231718_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000297151
Ensembl peptide - ENSP00000429990
Ensembl peptide - ENSP00000428943
Ensembl peptide - ENSP00000428362
NCBI entrez gene - 10569     See in Manteia.
OMIM - 605974
RefSeq - XM_011534418
RefSeq - NM_006425
RefSeq - XM_005265793
RefSeq Peptide - NP_006416
swissprot - E5RK41
swissprot - O95391
swissprot - A0A0C4DGD2
swissprot - E5RGM7
Ensembl - ENSG00000164609
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slu7ENSDARG00000038870Danio rerio
 SLU7ENSGALG00000034414Gallus gallus
 Slu7ENSMUSG00000020409Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR021715  Pre-mRNA splicing Prp18-interacting factor
 IPR036875  Zinc finger, CCHC-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000375 RNA splicing, via transesterification reactions IDA
 biological_processGO:0000380 alternative mRNA splicing, via spliceosome IDA
 biological_processGO:0000389 mRNA 3"-splice site recognition IDA
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006405 RNA export from nucleus TAS
 biological_processGO:0006406 mRNA export from nucleus TAS
 biological_processGO:0006886 intracellular protein transport IDA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0031124 mRNA 3"-end processing TAS
 biological_processGO:0034605 cellular response to heat IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0016607 nuclear speck IDA
 cellular_componentGO:0030532 small nuclear ribonucleoprotein complex IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0000386 second spliceosomal transesterification activity IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IDA
 molecular_functionGO:0030628 pre-mRNA 3"-splice site binding IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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