ENSGALG00000034414


Gallus gallus

Features
Gene ID: ENSGALG00000034414
  
Biological name :SLU7
  
Synonyms : pre-mRNA-splicing factor SLU7 / SLU7
  
Possible biological names infered from orthology : O95391 / Q8BHJ9 / SLU7 homolog, splicing factor
  
Species: Gallus gallus
  
Chr. number: 13
Strand: 1
Band:
Gene start: 7821296
Gene end: 7832434
  
Corresponding Affymetrix probe sets: Gga.20067.1.S1_s_at (Chicken Array)   GgaAffx.12925.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000047338
Ensembl peptide - ENSGALP00000057589
NCBI entrez gene - 416157     See in Manteia.
RefSeq - NM_001006146
RefSeq Peptide - NP_001006146
swissprot - A0A1D5PX95
swissprot - A0A1D5P3T3
Ensembl - ENSGALG00000034414
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slu7ENSDARG00000038870Danio rerio
 SLU7ENSG00000164609Homo sapiens
 Slu7ENSMUSG00000020409Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR021715  Pre-mRNA splicing Prp18-interacting factor


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000375 RNA splicing, via transesterification reactions IEA
 biological_processGO:0000380 alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0000389 mRNA 3"-splice site recognition IEA
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0034605 cellular response to heat IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0030532 small nuclear ribonucleoprotein complex IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0000386 second spliceosomal transesterification activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0030628 pre-mRNA 3"-splice site binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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