ENSG00000165688


Homo sapiens

Features
Gene ID: ENSG00000165688
  
Biological name :PMPCA
  
Synonyms : peptidase, mitochondrial processing alpha subunit / PMPCA / Q10713
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: 1
Band: q34.3
Gene start: 136410570
Gene end: 136423761
  
Corresponding Affymetrix probe sets: 212088_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000360782
Ensembl peptide - ENSP00000408393
Ensembl peptide - ENSP00000416702
NCBI entrez gene - 23203     See in Manteia.
OMIM - 613036
RefSeq - XM_017014543
RefSeq - NM_001282944
RefSeq - NM_001282946
RefSeq - NM_015160
RefSeq - XM_005266059
RefSeq - XM_011518417
RefSeq Peptide - NP_001269873
RefSeq Peptide - NP_001269875
RefSeq Peptide - NP_055975
swissprot - Q10713
swissprot - Q5SXN9
Ensembl - ENSG00000165688
  
Related genetic diseases (OMIM): 213200 - Spinocerebellar ataxia, autosomal recessive 2, 213200
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pmpcaENSDARG00000102607Danio rerio
 PMPCAENSGALG00000001950Gallus gallus
 PmpcaENSMUSG00000026926Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P22695 / UQCRC2 / ubiquinol-cytochrome c reductase core protein 2ENSG0000014074022


Protein motifs (from Interpro)
Interpro ID Name
 IPR001431  Peptidase M16, zinc-binding site
 IPR007863  Peptidase M16, C-terminal
 IPR011249  Metalloenzyme, LuxS/M16 peptidase-like
 IPR011765  Peptidase M16, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis TAS
 biological_processGO:0006627 protein processing involved in protein targeting to mitochondrion IEA
 biological_processGO:0006851 mitochondrial calcium ion transmembrane transport TAS
 cellular_componentGO:0005615 extracellular space HDA
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0005743 mitochondrial inner membrane TAS
 cellular_componentGO:0005759 mitochondrial matrix IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004222 metalloendopeptidase activity TAS
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008237 metallopeptidase activity IEA
 molecular_functionGO:0008270 zinc ion binding IBA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Mitochondrial protein import
Processing of SMDT1


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000708 Behavioural/Psychiatric Abnormality 
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 HP:0000750 Impaired language development 
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 HP:0001107 Ocular albinism 
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 HP:0001152 Saccadic smooth pursuit 
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001310 Dysmetria 
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001761 Pes cavus 
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 HP:0002024 Malabsorption 
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002070 Limb ataxia 
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 HP:0002311 Incoordination 
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 HP:0002317 Unsteady gait 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0003593 Early onset 
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 HP:0003680 Nonprogressive disorder 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0007513 Generalized hypopigmentation 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0011364 White hair "Hypopigmented hair that appears white." [DDD:cmoss]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000105819 PMPCB / O75439 / peptidase, mitochondrial processing beta subunit  / complex






 

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