ENSG00000167632


Homo sapiens

Features
Gene ID: ENSG00000167632
  
Biological name :TRAPPC9
  
Synonyms : Q96Q05 / trafficking protein particle complex 9 / TRAPPC9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: -1
Band: q24.3
Gene start: 139730343
Gene end: 140458579
  
Corresponding Affymetrix probe sets: 221672_s_at (Human Genome U133 Plus 2.0 Array)   221836_s_at (Human Genome U133 Plus 2.0 Array)   56829_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000488007
Ensembl peptide - ENSP00000373979
Ensembl peptide - ENSP00000405060
Ensembl peptide - ENSP00000430116
NCBI entrez gene - 83696     See in Manteia.
OMIM - 611966
RefSeq - XM_017013894
RefSeq - NM_001321646
RefSeq - NM_031466
RefSeq - XM_011517326
RefSeq - XM_011517328
RefSeq - XM_011517330
RefSeq - XM_017013893
RefSeq - NM_001160372
RefSeq Peptide - NP_113654
RefSeq Peptide - NP_001153844
RefSeq Peptide - NP_001308575
swissprot - H0YBR0
swissprot - Q96Q05
swissprot - A0A0J9YWK7
Ensembl - ENSG00000167632
  
Related genetic diseases (OMIM): 613192 - Mental retardation, autosomal recessive 13, 613192
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trappc9ENSDARG00000103106Danio rerio
 TRAPPC9ENSGALG00000042766Gallus gallus
 Q3U0M1ENSMUSG00000047921Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR013935  TRAPP II complex, Trs120


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0021987 cerebral cortex development IMP
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030182 neuron differentiation IEA
 biological_processGO:0048208 COPII vesicle coating TAS
 biological_processGO:0051092 positive regulation of NF-kappaB transcription factor activity IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005802 trans-Golgi network IBA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0030008 TRAPP complex IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017112 Rab guanyl-nucleotide exchange factor activity TAS


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000219 Thin upper lip 
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000311 Round face "An unusually round appearance of the face." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000319 Flat philtrum 
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 HP:0000322 Short philtrum 
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 HP:0000341 Narrow forehead "An abnormally reduced side-to-side width of the forehead." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000470 Short neck 
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 HP:0000601 Hypotelorism 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000752 Hyperactivity 
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 HP:0000851 Congenital hypothyroidism 
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 HP:0001182 Tapered fingers 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001956 Truncal obesity "Obesity located preferentially in the trunk of the body as opposed to the extremities." [HPO:curators]
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 HP:0002047 Malignant hyperthermia "Malignant hyperthermia is characterized by a rapid increase in temperature to 39-42 degrees C in response to inhalational anesthetics such as halothane or to muscle relaxants such as succinylcholine." [HPO:curators]
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002123 Myoclonic seizures "Myoclonic seizures are sudden, brief losses of consciousness and postural tone not associated with tonic muscular contractions. Myoclonic seizures may involve one body part or the entire body. In the latter case, the myoclonic seizure is accompanied by a violent fall but not by loss of consciousness." [HPO:curators]
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 HP:0002265 Large fleshy ears 
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 HP:0002334 Abnormality of the cerebellar vermis 
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 HP:0002714 Downturned corners of mouth "A morphological `abnormality of the mouth` (HP:0000153) in which the `angle of the mouth` (FMA:77269) is downturned." [HPO:probinson]
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 HP:0003593 Early onset 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0005484 Microcephaly, postnatal 
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 HP:0007052 Multifocal cerebral white matter abnormalities 
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 HP:0007642 Congenital stationary night blindness 
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 HP:0009891 Hypoplasia of the supraorbital ridges "Underdevelopment of the supraorbital ridges." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0011228 Horizontal eyebrow "An eyebrow that extends straight across the brow, without curve." [pmid:19125427]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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