ENSG00000167995


Homo sapiens

Features
Gene ID: ENSG00000167995
  
Biological name :BEST1
  
Synonyms : BEST1 / bestrophin 1 / O76090
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: 1
Band: q12.3
Gene start: 61949821
Gene end: 61965515
  
Corresponding Affymetrix probe sets: 1554442_at (Human Genome U133 Plus 2.0 Array)   1554443_s_at (Human Genome U133 Plus 2.0 Array)   207671_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000433195
Ensembl peptide - ENSP00000367282
Ensembl peptide - ENSP00000399709
Ensembl peptide - ENSP00000431189
Ensembl peptide - ENSP00000432681
NCBI entrez gene - 7439     See in Manteia.
OMIM - 607854
RefSeq - XM_017018230
RefSeq - XM_005274215
RefSeq - XM_005274216
RefSeq - XM_005274219
RefSeq - XM_005274221
RefSeq - XM_011545229
RefSeq - XM_011545230
RefSeq - XM_017018228
RefSeq - XM_017018229
RefSeq - NM_001139443
RefSeq - NM_001300786
RefSeq - NM_001300787
RefSeq - NM_004183
RefSeq - XM_005274210
RefSeq Peptide - NP_001287716
RefSeq Peptide - NP_004174
RefSeq Peptide - NP_001132915
RefSeq Peptide - NP_001287715
swissprot - O76090
swissprot - B7Z1N8
swissprot - E9PMB5
swissprot - A0A0C4DGE9
Ensembl - ENSG00000167995
  
Related genetic diseases (OMIM): 153700 - Macular dystrophy, vitelliform, 2, 153700
  193220 - Microcornea, rod-cone dystrophy, cataract, and posterior staphyloma, 193220
  611809 - Bestrophinopathy, autosomal recessive, 611809
  613194 - Retinitis pigmentosa, concentric, 613194
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 best1ENSDARG00000078331Danio rerio
 BEST1ENSGALG00000007217Gallus gallus
 Best1ENSMUSG00000037418Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
BEST3 / Q8N1M1 / bestrophin 3ENSG0000012732540
BEST2 / Q8NFU1 / bestrophin 2ENSG0000003998737
BEST4 / Q8NFU0 / bestrophin 4ENSG0000014295933


Protein motifs (from Interpro)
Interpro ID Name
 IPR000615  Bestrophin
 IPR021134  Bestrophin/UPF0187
 IPR033041  Bestrophin-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006821 chloride transport IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0015701 bicarbonate transport IEA
 biological_processGO:0030321 transepithelial chloride transport IDA
 biological_processGO:0034220 ion transmembrane transport TAS
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0050908 detection of light stimulus involved in visual perception IEA
 biological_processGO:0051924 regulation of calcium ion transport IEA
 biological_processGO:1902476 chloride transmembrane transport IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane TAS
 cellular_componentGO:0016021 integral component of membrane TAS
 cellular_componentGO:0016323 basolateral plasma membrane IEA
 cellular_componentGO:0034707 chloride channel complex IEA
 molecular_functionGO:0005229 intracellular calcium activated chloride channel activity TAS
 molecular_functionGO:0005254 chloride channel activity IEA
 molecular_functionGO:0015106 bicarbonate transmembrane transporter activity TAS
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
Stimuli-sensing channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000540 Hypermetropia 
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 HP:0000541 Detached retina 
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 HP:0000543 Pale optic disks 
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 HP:0000551 Abnormal color vision 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000602 Ophthalmoplegia 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000654 Decreased electroretinogram (ERG) 
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 HP:0000662 Night blindness 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001123 Visual field defects 
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 HP:0001139 Choroideremia 
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 HP:0001249 Mental retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007641 Secondary dyschromatopsia 
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 HP:0007661 Chorioretinal hypopigmentation and hyperpigmentation 
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 HP:0007663 Decreased central vision 
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 HP:0007675 Progressive night blindness 
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 HP:0007677 Vitelliform macular dystrophy 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007722 Loss of retinal pigment epithelium 
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 HP:0007730 Reduced iris pigmentation 
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 HP:0007754 Macular dystrophy 
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 HP:0007843 Attenuation of retinal blood vessels 
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 HP:0007899 Retinal nonattachment 
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 HP:0007902 Vitreous hemorrhage 
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 HP:0007985 Retinal arteriolar narrowing and occlusion 
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 HP:0008028 Cystoid macular degeneration 
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 HP:0008043 Constricted retinal arterioles 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008736 Hypoplasia of penis 
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 HP:0010693 Pulverulent Cataract "A kind of `congenital cataract` (HP:0000519) that is characterized by a hollow sphere of punctate opacities involving the fetal nucleus and that usually occurs bilaterally." [HPO:probinson]
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 HP:0012045 Retinal flecks "Presence of multiple yellowish-white lesions of various size and configuration on the retina not related to vascular lesions." [pmid:7952338]
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 HP:0012508 Metamorphopsia "A visual anomaly in which images appear distorted. A grid of straight lines appears wavy and parts of the grid may appear blank." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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