ENSG00000168282


Homo sapiens

Features
Gene ID: ENSG00000168282
  
Biological name :MGAT2
  
Synonyms : mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase / MGAT2 / Q10469
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: 1
Band: q21.3
Gene start: 49620795
Gene end: 49623481
  
Corresponding Affymetrix probe sets: 203101_s_at (Human Genome U133 Plus 2.0 Array)   203102_s_at (Human Genome U133 Plus 2.0 Array)   211061_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000307423
NCBI entrez gene - 4247     See in Manteia.
OMIM - 602616
RefSeq - NM_002408
RefSeq Peptide - NP_002399
swissprot - Q10469
Ensembl - ENSG00000168282
  
Related genetic diseases (OMIM): 212066 - Congenital disorder of glycosylation, type IIa, 212066
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 mgat2ENSDARG00000052408Danio rerio
 MGAT2ENSGALG00000031212Gallus gallus
 Mgat2ENSMUSG00000043998Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007754  N-acetylglucosaminyltransferase II
 IPR029044  Nucleotide-diphospho-sugar transferases


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006486 protein glycosylation IEA
 biological_processGO:0006487 protein N-linked glycosylation TAS
 biological_processGO:0009311 oligosaccharide metabolic process TAS
 biological_processGO:0009312 oligosaccharide biosynthetic process IEA
 biological_processGO:0018279 protein N-linked glycosylation via asparagine IEA
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005795 Golgi stack IEA
 cellular_componentGO:0016020 membrane TAS
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity TAS
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0030246 carbohydrate binding IEA


Pathways (from Reactome)
Pathway description
Defective MGAT2 causes MGAT2-CDG (CDG-2a)
Reactions specific to the complex N-glycan synthesis pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000098 Increased body height 
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 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000164 Abnormality of the teeth "Any abnormality of the primary (deciduous) or permanent teeth." [HPO:curators]
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 HP:0000194 Open mouth 
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 HP:0000212 Gingival hyperplasia 
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 HP:0000232 Everted lower lip 
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 HP:0000233 Thin vermillion border 
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000278 Retrognathia 
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000400 Large ears 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000426 Prominent nasal bridge 
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 HP:0000470 Short neck 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
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 HP:0000574 Thick eyebrows 
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 HP:0000699 Diastema 
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000733 Stereotyped, repetitive behaviour 
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 HP:0000742 Self-mutilation 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0001007 Hirsutism "Abnormally increased hair growth." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001547 Abnormality of the morphology or size of the rib cage 
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 HP:0001572 Macrodontia "Increased size of one or more teeth." [HPO:curators]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001929 Factor XI deficiency 
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 HP:0001976 Antithrombin III deficiency 
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 HP:0002317 Unsteady gait 
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 HP:0002673 Coxa valga "Coxa valga is a deformity of the hip in which the angle between the femoral shaft and the femoral neck is increased compared to age-adjusted values (about 150 degrees in newborns gradually reducing to 120-130 degrees in adults)." [HPO:curators]
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 HP:0003100 Thin long bones 
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 HP:0003160 Abnormal isoelectric focusing of serum transferrin 
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 HP:0003423 Thoracolumbar kyphoscoliosis 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004841 Factor XII deficiency 
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 HP:0006887 Mental retardation, progressive "Mental retardation is defined as a decreased intelligence quotient of varying degree. The term progressive mental retardation should be used if intelligence decreases/deteriorates over time." [HPO:curators]
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 HP:0007466 Midfrontal capillary hemangioma 
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 HP:0008070 Sparse hair 
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 HP:0008897 Growth retardation, progressive 
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 HP:0009623 Proximally placed thumb "Proximally displaced thumb." [HPO:curators]
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 HP:0009765 Columella, low hanging "Columella extending inferior to the level of the nasal base, when viewed from the side." [pmid:19152422]
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 HP:0010808 Protruding tongue "Tongue extending beyond the alveolar ridges or teeth at rest." [pmid:19125428]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0011858 Reduced factor IX activity "Decreased activity of `coagulation factor IX` (PR:000007303). Factor IX, which itself is activated by factor Xa or factor VIIa to form factor IXa, activates factor X into factor Xa." [HPO:probinson]
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 HP:0012301 Type II transferrin isoform profile "Abnormal transferrin isoform profile consistent with a type II congenital disorder of glycosylation." [HPO:probinson, pmid:15105360]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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