ENSG00000168389


Homo sapiens

Features
Gene ID: ENSG00000168389
  
Biological name :MFSD2A
  
Synonyms : major facilitator superfamily domain containing 2A / MFSD2A / Q8NA29
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p34.2
Gene start: 39955112
Gene end: 39969968
  
Corresponding Affymetrix probe sets: 1553386_at (Human Genome U133 Plus 2.0 Array)   225316_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000361895
Ensembl peptide - ENSP00000361898
Ensembl peptide - ENSP00000391261
Ensembl peptide - ENSP00000407606
NCBI entrez gene - 84879     See in Manteia.
OMIM - 614397
RefSeq - NM_032793
RefSeq - XM_011542312
RefSeq - NM_001136493
RefSeq - NM_001287808
RefSeq - NM_001287809
RefSeq - NM_001349821
RefSeq - NM_001349823
RefSeq - XM_005271285
RefSeq Peptide - NP_001129965
RefSeq Peptide - NP_001274738
RefSeq Peptide - NP_001336750
RefSeq Peptide - NP_001336752
RefSeq Peptide - NP_116182
RefSeq Peptide - NP_001274737
swissprot - Q8NA29
swissprot - E7EPI8
swissprot - Q5SSK0
Ensembl - ENSG00000168389
  
Related genetic diseases (OMIM): 616486 - Microcephaly 15, primary, autosomal recessive, 616486
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 mfsd2aaENSDARG00000030630Danio rerio
 Q6DEJ6ENSDARG00000035909Danio rerio
 MFSD2AENSGALG00000003879Gallus gallus
 Mfsd2aENSMUSG00000028655Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
A6NFX1 / MFSD2B / major facilitator superfamily domain containing 2BENSG0000020563937


Protein motifs (from Interpro)
Interpro ID Name
 IPR036259  MFS transporter superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006656 phosphatidylcholine biosynthetic process TAS
 biological_processGO:0006869 lipid transport IEA
 biological_processGO:0015908 fatty acid transport IEA
 biological_processGO:0021766 hippocampus development IEA
 biological_processGO:0045056 transcytosis IEA
 biological_processGO:0051977 lysophospholipid transport IDA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0060856 establishment of blood-brain barrier IEA
 biological_processGO:1990379 lipid transport across blood brain barrier IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005548 phospholipid transporter activity IEA
 molecular_functionGO:0015245 fatty acid transmembrane transporter activity ISS
 molecular_functionGO:0015293 symporter activity ISS
 molecular_functionGO:0051978 lysophospholipid transporter activity IDA


Pathways (from Reactome)
Pathway description
Synthesis of PC


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
Show

 HP:0000122 Unilateral renal agenesis 
Show

 HP:0000219 Thin upper lip 
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
Show

 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
Show

 HP:0000582 Upslanting palpebral fissures 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
Show

 HP:0001285 Spastic tetraparesis "Spastic weakness affecting all four limbs." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
Show

 HP:0001321 Cerebellar hypoplasia 
Show

 HP:0001344 Absent speech development 
Show

 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
Show

 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
Show

 HP:0002064 Spastic gait 
Show

 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
Show

 HP:0002119 Ventriculomegaly 
Show

 HP:0002282 Heterotopia 
Show

 HP:0002365 Hypoplasia of the brainstem 
Show

 HP:0002540 Inability to walk 
Show

 HP:0003103 Abnormality of cortical bone "An abnormality of cortical bone (also known as compact bone), which forms the dense surface of bones." [HPO:curators]
Show

 HP:0003577 Onset at birth 
Show

 HP:0003676 Progressive disorder 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0007333 Hypoplastic frontal lobes "Underdevelopment of the frontal lobe of the cerebrum." [HPO:sdoelken]
Show

 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr