ENSG00000169359


Homo sapiens

Features
Gene ID: ENSG00000169359
  
Biological name :SLC33A1
  
Synonyms : O00400 / SLC33A1 / solute carrier family 33 member 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: q25.31
Gene start: 155821024
Gene end: 155854456
  
Corresponding Affymetrix probe sets: 1554148_a_at (Human Genome U133 Plus 2.0 Array)   203164_at (Human Genome U133 Plus 2.0 Array)   203165_s_at (Human Genome U133 Plus 2.0 Array)   243724_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000496241
Ensembl peptide - ENSP00000494846
Ensembl peptide - ENSP00000495971
Ensembl peptide - ENSP00000352456
Ensembl peptide - ENSP00000376587
Ensembl peptide - ENSP00000418847
Ensembl peptide - ENSP00000419066
Ensembl peptide - ENSP00000419165
Ensembl peptide - ENSP00000493564
Ensembl peptide - ENSP00000494476
NCBI entrez gene - 9197     See in Manteia.
OMIM - 603690
RefSeq - XM_017007464
RefSeq - NM_001190992
RefSeq - NM_004733
RefSeq - XM_011513311
RefSeq - XM_017007462
RefSeq - XM_017007463
RefSeq Peptide - NP_004724
RefSeq Peptide - NP_001177921
swissprot - H7C562
swissprot - H7C577
swissprot - O00400
swissprot - H7C532
Ensembl - ENSG00000169359
  
Related genetic diseases (OMIM): 612539 - Spastic paraplegia 42, autosomal dominant, 612539
  614482 - Congenital cataracts, hearing loss, and neurodegeneration, 614482
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc33a1ENSDARG00000020085Danio rerio
 ENSGALG00000010302Gallus gallus
 Q99J27ENSMUSG00000027822Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AC104472.3ENSG0000028495250


Protein motifs (from Interpro)
Interpro ID Name
 IPR004752  AmpG-like permease/Acetyl-coenzyme A transporter 1
 IPR024371  Acetyl-coenzyme A transporter 1
 IPR036259  MFS transporter superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0015876 acetyl-CoA transport IEA
 biological_processGO:0030509 BMP signaling pathway IDA
 biological_processGO:0055085 transmembrane transport TAS
 biological_processGO:0060395 SMAD protein signal transduction IDA
 biological_processGO:1902600 proton transmembrane transport IEA
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0008521 acetyl-CoA transmembrane transporter activity IEA
 molecular_functionGO:0015295 solute:proton symporter activity IBA


Pathways (from Reactome)
Pathway description
Transport of vitamins, nucleosides, and related molecules
Defective SLC33A1 causes spastic paraplegia 42 (SPG42)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000519 Congenital cataract "A congenital `cataract` (HP:0000518)." [HPO:probinson]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001258 Spastic paraplegia 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001344 Absent speech development 
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 HP:0001761 Pes cavus 
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 HP:0002059 Cerebral atrophy 
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 HP:0002064 Spastic gait 
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 HP:0002166 Decreased vibratory sense in the lower limbs "A decrease in the ability to perceive vibration in the legs." [HPO:curators]
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 HP:0002169 Clonus 
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 HP:0002314 Degeneration of the lateral corticospinal tracts 
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 HP:0002395 Lower limb hyperreflexia 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003429 Hypomyelination 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003593 Early onset 
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 HP:0003676 Progressive disorder 
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 HP:0006895 Lower limb hypertonia 
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 HP:0007020 Progressive spastic paraplegia 
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 HP:0007210 Lower limb hypotrophy 
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 HP:0007340 Lower limb muscle weakness "Weakness of the muscles of the legs." [HPO:curators]
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 HP:0008075 Progressive pes cavus 
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 HP:0010837 Decreased serum ceruloplasmin "A kind of `Abnormality of copper homeostasis` (HP:0010836) related to a `decreased concentration` (PATO:0001163) of `ceruloplasmin` (PR:000005794) in the `blood` (FMA:9670)." [HPO:probinson]
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 HP:0100561 Spinal cord lesions 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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