ENSG00000174106


Homo sapiens

Features
Gene ID: ENSG00000174106
  
Biological name :LEMD3
  
Synonyms : LEMD3 / LEM domain containing 3 / Q9Y2U8
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q14.3
Gene start: 65169571
Gene end: 65248327
  
Corresponding Affymetrix probe sets: 218604_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000308369
NCBI entrez gene - 23592     See in Manteia.
OMIM - 607844
RefSeq - NM_001167614
RefSeq - NM_014319
RefSeq Peptide - NP_001161086
RefSeq Peptide - NP_055134
swissprot - Q9Y2U8
swissprot - A0A024RBB9
Ensembl - ENSG00000174106
  
Related genetic diseases (OMIM): 166700 - Buschke-Ollendorff syndrome, 166700
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lemd3ENSDARG00000015824Danio rerio
 LEMD3ENSGALG00000009873Gallus gallus
 Lemd3ENSMUSG00000048661Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LEMD2 / Q8NC56 / LEM domain containing 2ENSG0000016190416


Protein motifs (from Interpro)
Interpro ID Name
 IPR003887  LEM domain
 IPR011015  LEM/LEM-like domain superfamily
 IPR018996  Man1-Src1p-C-terminal domain
 IPR034394  MAN1, RNA recognition motif
 IPR034997  Inner nuclear membrane protein Man1
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0006997 nucleus organization IEA
 biological_processGO:0006998 nuclear envelope organization IBA
 biological_processGO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway IDA
 biological_processGO:0030514 negative regulation of BMP signaling pathway IDA
 biological_processGO:0032926 negative regulation of activin receptor signaling pathway IDA
 biological_processGO:0070197 meiotic attachment of telomere to nuclear envelope IBA
 biological_processGO:1902531 regulation of intracellular signal transduction IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005637 nuclear inner membrane IDA
 cellular_componentGO:0005639 integral component of nuclear inner membrane TAS
 cellular_componentGO:0016020 membrane TAS
 cellular_componentGO:0016021 integral component of membrane IDA
 cellular_componentGO:0031965 nuclear membrane IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0031490 chromatin DNA binding IBA


Pathways (from Reactome)
Pathway description
Clearance of Nuclear Envelope Membranes from Chromatin
Initiation of Nuclear Envelope Reformation
Depolymerisation of the Nuclear Lamina


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000085 Horseshoe kidney 
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 HP:0000086 Ectopic kidney "A developmental defect in which a kidney is located in an abnormal anatomic position." [HPO:curators]
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 HP:0000089 Renal hypoplasia 
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 HP:0000164 Abnormality of the teeth "Any abnormality of the primary (deciduous) or permanent teeth." [HPO:curators]
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 HP:0000233 Thin vermillion border 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000325 Triangular facies 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000426 Prominent nasal bridge 
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 HP:0000445 Broad nose 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000490 Deep set eyes 
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 HP:0000505 Impaired vision 
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 HP:0000574 Thick eyebrows 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000750 Impaired language development 
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 HP:0000819 Diabetes mellitus 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0000953 Hyperpigmentation 
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0000987 Scarring 
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 HP:0001004 Lymphedema 
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 HP:0001012 Lipomas "The presence of multiple lipomas (a type of benign tissue made of fatty tissue)." [HPO:curators]
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 HP:0001028 Hemangiomas "The presence of multiple hemangiomas. A hemangioma is a benign tumor characterized by blood-filled spaces lined by benign endothelial cells. A hemangioma characterized by large endothelial spaces (caverns) is called a cavernous hemangioma (in contrast to a hemangioma with small endothelial spaces, which is called capillary hemangioma)." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001369 Arthritis 
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 HP:0001371 Contractures 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001482 Subcutaneous nodules 
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001609 Hoarse voice 
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 HP:0001679 Abnormalities of the aorta 
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 HP:0001743 Abnormality of the spleen 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002308 Arnold-Chiari malformation "Arnold-Chiari malformation consists of a downward displacement of the cerebellar tonsils and the medulla through the foramen magnum, sometimes causing hydrocephalus as a result of obstruction of CSF outflow." [HPO:curators]
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 HP:0002566 Intestinal malrotation "An abnormality of the intestinal rotation and fixation that normally occurs during the development of the gut. This can lead to volvulus, or twisting of the intestine that causes obstruction and necrosis." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002652 Skeletal dysplasia 
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 HP:0002653 Bone pain 
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 HP:0002714 Downturned corners of mouth "A morphological `abnormality of the mouth` (HP:0000153) in which the `angle of the mouth` (FMA:77269) is downturned." [HPO:probinson]
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0002829 Arthralgia 
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 HP:0003103 Abnormality of cortical bone "An abnormality of cortical bone (also known as compact bone), which forms the dense surface of bones." [HPO:curators]
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003326 Myalgia "A tendency to experience muscle pain." [HPO:curators]
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 HP:0003396 Syringomyelia 
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 HP:0003676 Progressive disorder 
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 HP:0003745 Sporadic 
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 HP:0003764 Abnormal or excess nevi 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005288 Abnormality of the nares "Abnormality of the `nostril` (FMA:59645)." [HPO:curators]
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 HP:0005469 Occipital plagiocephaly "Occipital plagiocephaly can result from fusion or sclerosis of the lambdoid suture. If unilateral, this is accompanied by unilateral occipital flattening and bulging of the ispilateral frontal bone." [HPO:curators]
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 HP:0005789 Osteosclerosis, diffuse symmetrical 
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0007488 Diffuse skin atrophy 
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 HP:0007513 Generalized hypopigmentation 
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 HP:0009055 Generalized limb muscle atrophy "Generalized atrophy affecting muscles of the limbs." [HPO:curators]
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 HP:0010001 Complete duplication of the distal phalanges of the hand "A complete duplication affecting one or more of the distal phalanges of the hand. As opposed to a partial duplication were there is still a variable degree of fusion between the duplicated bones, a complete duplication leads to two separate bones appearing side to side (radio-ulnar axis) as seen on x-rays. A duplication leading to an accesory bone appearing in the proximo-distal axis on x-rays, this is actually a different entity called a Pseudoepiphyses (see according terms) sometimes also refered to as Hyperphalangism." [HPO:curators]
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 HP:0010554 Cutaneous syndactyly of the fingers "Webbing or fusion of the fingers involving soft parts only." [HPO:curators]
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 HP:0010739 Osteopoikilosis "Osteopoikilosis is a benign, asymptomatic sclerotic dysplasia of the bones. It affects both male and female and may be seen at any age. Radiographically sclerotic circular or ovoid lesions are usually symmetrically distributed in a periarticular location. Lesions can increase or decrease in size and number in serial radiographs or even disappear and do not have increased bone radiotracer uptake." [HPO:sdoelken]
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 HP:0011001 Increased bone mineral density "An abnormal increase of bone mineral density, that is, of the amount of matter per cubic centimeter of bones which is often refered to as osteosclerosis. Osteosclerosis can be detected on radiological examination as an increased whiteness (density) of affected bones." [HPO:curators]
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 HP:0100324 Scleroderma "A chronic autoimmune disease characterized by fibrosis (or hardening), vascular alterations, and autoantibodies." [HPO:sdoelken]
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 HP:0100774 Hyperostosis "Excessive growth or abnormal thickening of bone tissue." [HPO:probinson]
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 HP:0100898 Connective tissue nevi "Connective tissue nevi are hamartomas in which one or several components of the dermis is altered." [HPO:sdoelken]
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 HP:0200034 skin papules "A circumscribed, solid elevation of skin with no visible fluid, varying in size from a pinhead to less than 10mm in diameter at the widest point." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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