ENSG00000178971


Homo sapiens

Features
Gene ID: ENSG00000178971
  
Biological name :CTC1
  
Synonyms : CST telomere replication complex component 1 / CTC1 / Q2NKJ3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: p13.1
Gene start: 8224821
Gene end: 8248095
  
Corresponding Affymetrix probe sets: 219435_at (Human Genome U133 Plus 2.0 Array)   235523_at (Human Genome U133 Plus 2.0 Array)   240875_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000494323
Ensembl peptide - ENSP00000462720
Ensembl peptide - ENSP00000463230
Ensembl peptide - ENSP00000313759
Ensembl peptide - ENSP00000396018
Ensembl peptide - ENSP00000462607
NCBI entrez gene - 80169     See in Manteia.
OMIM - 613129
RefSeq - XM_011524011
RefSeq - NM_025099
RefSeq - XM_006721577
RefSeq - XM_006721578
RefSeq - XM_011524010
RefSeq Peptide - NP_079375
swissprot - Q2NKJ3
swissprot - J3KSZ1
swissprot - J3QKT7
swissprot - J3KSR1
Ensembl - ENSG00000178971
  
Related genetic diseases (OMIM): 612199 - Cerebroretinal microangiopathy with calcifications and cysts, 612199
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ctc1ENSDARG00000070119Danio rerio
 CTC1ENSGALG00000032036Gallus gallus
 Ctc1ENSMUSG00000020898Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR029156  CST complex subunit CTC1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000723 telomere maintenance IMP
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0007568 aging IEA
 biological_processGO:0010389 regulation of G2/M transition of mitotic cell cycle IEA
 biological_processGO:0010833 telomere maintenance via telomere lengthening IEA
 biological_processGO:0016233 telomere capping TAS
 biological_processGO:0032211 negative regulation of telomere maintenance via telomerase IDA
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0045740 positive regulation of DNA replication IBA
 biological_processGO:0048146 positive regulation of fibroblast proliferation IEA
 biological_processGO:0048536 spleen development IEA
 biological_processGO:0048538 thymus development IEA
 biological_processGO:0048539 bone marrow development IEA
 biological_processGO:0051276 chromosome organization IEA
 biological_processGO:0071425 hematopoietic stem cell proliferation IEA
 biological_processGO:0090399 replicative senescence IEA
 cellular_componentGO:0000781 chromosome, telomeric region IEA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IDA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:1990879 CST complex IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042162 telomeric DNA binding IDA
 molecular_functionGO:0098505 G-rich strand telomeric DNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000008 Abnormality of female internal genitalia 
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 HP:0000035 Abnormality of the testis 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000365 Hearing loss 
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 HP:0000498 Blepharitis "Inflammation of the eyelids." [HPO:curators]
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 HP:0000499 Abnormality of the eyelashes "An abnormality of the `eyelashes` (FMA:53669)." [HPO:probinson]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000534 Abnormality of the eyebrow "An abnormality of the `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000600 Abnormality of the pharynx 
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 HP:0000618 Blindness 
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 HP:0000648 Optic atrophy 
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000670 Carious teeth 
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 HP:0000679 Taurodontia 
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 HP:0000704 Periodontal disease 
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 HP:0000819 Diabetes mellitus 
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000963 Thin skin 
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0001034 Hyperpigmented macules 
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 HP:0001053 Hypopigmented skin patches 
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001268 Mental deterioration 
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001394 Cirrhosis 
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 HP:0001399 Hepatic failure 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001873 Thrombocytopenia 
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 HP:0001874 Abnormality of neutrophil 
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 HP:0001903 Anemia 
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 HP:0001928 Abnormality of coagulation 
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 HP:0002024 Malabsorption 
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 HP:0002062 Abnormality of the pyramidal tracts "An abnormality of the pyramidal system of motor neurons, whose chief element, the corticospinal tract, is the only direct connection between the brain and the spinal cord. In addition to the corticospinal tract, the pyramidal system includes the corticobulbar, corticomesencephalic, and corticopontine tracts." [HPO:curators]
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 HP:0002071 Extrapyramidal signs 
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 HP:0002164 Nail dysplasia 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002216 Premature graying of hair 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002301 Hemiplegia "Paralysis (complete loss of muscle function) in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
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 HP:0002352 Leukoencephalopathy 
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 HP:0002415 Leukodystrophy 
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 HP:0002514 Cerebral calcification "The presence of calcification within brain structures." [HPO:curators]
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 HP:0002575 Tracheoesophageal fistula "An abnormal connection (fistula) between the esophagus and the trachea." [HPO:curators]
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 HP:0002584 Intestinal bleeding 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002659 Increased susceptibility to fractures "An abnormally increased tendency to fractures of bones caused by an abnormal reduction in bone strength that is generally associated with an increased risk of fracture." [HPO:sdoelken]
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 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
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 HP:0002745 Oral leukoplakia 
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 HP:0002756 Pathologic fracture "A pathologic fracture occurs when a bone breaks in an area that is weakened secondary to another disease process such as tumor, infection, and certain inherited bone disorders. A pathologic fracture can occur without a degree of trauma required to cause fracture in healthy bone." [HPO:curators]
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0002857 Genu valgum 
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 HP:0002894 Pancreatic cancer 
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 HP:0003593 Early onset 
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 HP:0003676 Progressive disorder 
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 HP:0003812 Phenotypic variability 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004979 Sclerotic, widened metaphyses 
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 HP:0005374 Cellular immunodeficiency 
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 HP:0005528 Bone marrow hypoplasia 
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 HP:0007256 Mild pyramidal signs 
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 HP:0007763 Retinal telangiectasia 
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 HP:0007898 Exudative retinopathy 
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 HP:0008065 Aplasia/Hypoplasia of the skin 
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 HP:0008066 Abnormal blistering of the skin 
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 HP:0008070 Sparse hair 
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 HP:0008404 Nail dystrophy, variable 
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 HP:0008661 Urethral stenosis 
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 HP:0008897 Growth retardation, progressive 
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 HP:0010450 Esophageal stenosis "An abnormal narrowing of the lumen of the esophagus." [HPO:curators]
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 HP:0010624 Aplastic/hypoplastic toenails 
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 HP:0010885 Aseptic necrosis "A disease where there is cellular death (necrosis) of bone components due to interruption of the blood supply." [HPO:sdoelken]
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 HP:0011364 White hair "Hypopigmented hair that appears white." [DDD:cmoss]
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 HP:0012732 Anorectal anomaly "An abnormality of the anus or rectum." [HPO:probinson]
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 HP:0100585 Teleangiectasia of the skin 
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 HP:0100627 Displacement of the external urethral meatus "A displacement of the external urethral orifice from its normal position (in males normally placed at the tip of glans penis, in females normally placed about 2.5 cm behind the glans clitoridis and immediately in front of that of the vagina)." [HPO:sdoelken]
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 HP:0100670 Rough bone trabeculation 
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 HP:0100864 Hypoplasia of the femoral neck 
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 HP:0200037 skin vesicle "A circumscribed, fluid-containing, epidermal elevation generally considered less than 10mm in diameter at the widest point." [HPO:SKOEHLER]
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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