ENSG00000180879


Homo sapiens

Features
Gene ID: ENSG00000180879
  
Biological name :SSR4
  
Synonyms : P51571 / signal sequence receptor subunit 4 / SSR4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: q28
Gene start: 153793516
Gene end: 153798505
  
Corresponding Affymetrix probe sets: 201004_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000359104
Ensembl peptide - ENSP00000317331
Ensembl peptide - ENSP00000359102
Ensembl peptide - ENSP00000359103
NCBI entrez gene - 6748     See in Manteia.
OMIM - 300090
RefSeq - XM_017029757
RefSeq - NM_001204526
RefSeq - NM_001204527
RefSeq - NM_006280
RefSeq - XM_011531186
RefSeq - XM_011531187
RefSeq - XM_017029756
RefSeq Peptide - NP_001191455
RefSeq Peptide - NP_001191456
RefSeq Peptide - NP_006271
swissprot - P51571
swissprot - A6NLM8
Ensembl - ENSG00000180879
  
Related genetic diseases (OMIM): 300934 - Congenital disorder of glycosylation, type Iy, 300934
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ssr4ENSDARG00000019444Danio rerio
 Ssr4ENSMUSG00000002014Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008855  Translocon-associated


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005784 Sec61 translocon complex NAS
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0070062 extracellular exosome HDA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000085 Horseshoe kidney 
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 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000490 Deep set eyes 
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 HP:0000687 Widely spaced teeth 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001331 Absent septum pellucidum "Absence of the septum pellucidum." [HPO:curators]
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 HP:0001373 Joint dislocation "Displacement or malalignment of joints." [HPO:curators]
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001928 Abnormality of coagulation 
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 HP:0001999 Facial dysmorphism 
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 HP:0002013 Vomiting 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002518 Periventricular white matter changes 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0003256 Abnormalities of the clotting factors 
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 HP:0003577 Onset at birth 
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 HP:0003642 Abnormal isoelectric focusing of serum transferrin (type 1 pattern) 
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 HP:0011339 Abnormality of upper lip vermillion "An abnormality of the vermilion border, the sharp demarcation between the lip (red colored) and the adjacent normal skin." [HPO:probinson]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000114850 SSR3 / Q9UNL2 / signal sequence receptor subunit 3  / complex
 ENSG00000163479 SSR2 / P43308 / signal sequence receptor subunit 2  / complex
 ENSG00000124783 SSR1 / P43307 / signal sequence receptor subunit 1  / complex






 

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