ENSG00000180902


Homo sapiens

Features
Gene ID: ENSG00000180902
  
Biological name :D2HGDH
  
Synonyms : D2HGDH / D-2-hydroxyglutarate dehydrogenase / Q8N465
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q37.3
Gene start: 241734579
Gene end: 241768816
  
Corresponding Affymetrix probe sets: 228738_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000404596
Ensembl peptide - ENSP00000400212
Ensembl peptide - ENSP00000412511
Ensembl peptide - ENSP00000315351
Ensembl peptide - ENSP00000383580
Ensembl peptide - ENSP00000384723
Ensembl peptide - ENSP00000387479
Ensembl peptide - ENSP00000392602
Ensembl peptide - ENSP00000395837
NCBI entrez gene - 728294     See in Manteia.
OMIM - 609186
RefSeq - XM_017004832
RefSeq - XM_011511745
RefSeq - XM_011511746
RefSeq - XM_011511750
RefSeq - XM_011511754
RefSeq - XM_011511756
RefSeq - XM_011511757
RefSeq - XM_011511758
RefSeq - XM_011511759
RefSeq - XM_017004828
RefSeq - XM_017004829
RefSeq - XM_017004830
RefSeq - XM_017004831
RefSeq - NM_001287249
RefSeq - NM_001352824
RefSeq - NM_152783
RefSeq - XM_011511734
RefSeq - XM_011511735
RefSeq - XM_011511736
RefSeq - XM_011511737
RefSeq - XM_011511738
RefSeq - XM_011511739
RefSeq - XM_011511740
RefSeq - XM_011511743
RefSeq - XM_011511744
RefSeq Peptide - NP_689996
RefSeq Peptide - NP_001274178
RefSeq Peptide - NP_001339753
swissprot - H7C021
swissprot - H7C0N1
swissprot - H7C290
swissprot - F8WCF9
swissprot - Q8N465
swissprot - B5MCV2
swissprot - H7C3L2
swissprot - G5E9E8
swissprot - H7BZ32
Ensembl - ENSG00000180902
  
Related genetic diseases (OMIM): 600721 - D-2-hydroxyglutaric aciduria, 600721
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 d2hgdhENSDARG00000060210Danio rerio
 D2HGDHENSGALG00000039535Gallus gallus
 D2hgdhENSMUSG00000073609Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004113  FAD-linked oxidase, C-terminal
 IPR006094  FAD linked oxidase, N-terminal
 IPR016164  FAD-linked oxidase-like, C-terminal
 IPR016166  FAD-binding, type 2
 IPR016167  FAD-binding, type 2, subdomain 1
 IPR016171  Vanillyl-alcohol oxidase, C-terminal subdomain 2
 IPR036318  FAD-binding, type 2-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006103 2-oxoglutarate metabolic process TAS
 biological_processGO:0010042 response to manganese ion ISS
 biological_processGO:0010043 response to zinc ion IEA
 biological_processGO:0019516 lactate oxidation IBA
 biological_processGO:0022904 respiratory electron transport chain IBA
 biological_processGO:0032025 response to cobalt ion ISS
 biological_processGO:0044267 cellular protein metabolic process ISS
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005739 mitochondrion ISS
 cellular_componentGO:0005759 mitochondrial matrix TAS
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004458 D-lactate dehydrogenase (cytochrome) activity IBA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEA
 molecular_functionGO:0050660 flavin adenine dinucleotide binding IEA
 molecular_functionGO:0051990 (R)-2-hydroxyglutarate dehydrogenase activity ISS
 molecular_functionGO:0071949 FAD binding IBA


Pathways (from Reactome)
Pathway description
Interconversion of 2-oxoglutarate and 2-hydroxyglutarate


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001638 Cardiomyopathy 
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 HP:0001659 Aortic insufficiency "An insufficiency of the aortic valve, leading to regurgitation (backward flow) of blood from the aorta into the left ventricle." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
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 HP:0002188 Delayed myelination 
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 HP:0002416 Subependymal cysts 
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 HP:0002572 Episodic vomiting "Paroxysmal, recurrent episodes of vomiting." [HPO:curators]
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 HP:0003150 Glutaric aciduria 
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 HP:0005348 Inspiratory stridor "Inspiratory stridor is a high pitched sound upon inspiration that is generally related to laryngeal abnormalities." [HPO:curators]
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 HP:0006956 Dilation of lateral ventricles 
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 HP:0007052 Multifocal cerebral white matter abnormalities 
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 HP:0007105 Infantile encephalopathy 
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0012321 D-2-hydroxyglutaric aciduria "An increased concentration of `2-hydroxyglutaric acid` (CHEBI:17084) in the `urine` (FMA:12274)." [HPO:probinson, pmid:20847235]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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