ENSG00000181817


Homo sapiens

Features
Gene ID: ENSG00000181817
  
Biological name :LSM10
  
Synonyms : LSM10 / LSM10, U7 small nuclear RNA associated / Q969L4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p34.3
Gene start: 36391238
Gene end: 36397892
  
Corresponding Affymetrix probe sets: 225593_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000319341
NCBI entrez gene - 84967     See in Manteia.
RefSeq - NM_032881
RefSeq Peptide - NP_116270
swissprot - Q969L4
Ensembl - ENSG00000181817
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm10ENSDARG00000101222Danio rerio
 LSM10ENSGALG00000002127Gallus gallus
 Lsm10ENSMUSG00000050188Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008334 histone mRNA metabolic process TAS
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:1900087 positive regulation of G1/S transition of mitotic cell cycle IMP
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005683 U7 snRNP IDA
 cellular_componentGO:0015030 Cajal body IDA
 cellular_componentGO:0016604 nuclear body IDA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0071208 histone pre-mRNA DCP binding IEA
 molecular_functionGO:0071209 U7 snRNA binding IPI


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP independent Processing of Histone Pre-mRNAs
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr