ENSMUSG00000050188


Mus musculus

Features
Gene ID: ENSMUSG00000050188
  
Biological name :Lsm10
  
Synonyms : Lsm10 / Q8QZX5 / U7 snRNP-specific Sm-like protein LSM10
  
Possible biological names infered from orthology : LSM10, U7 small nuclear RNA associated / Q969L4
  
Species: Mus musculus
  
Chr. number: 4
Strand: 1
Band: D2.2
Gene start: 126096623
Gene end: 126098584
  
Corresponding Affymetrix probe sets: 10508112 (MoGene1.0st)   1417515_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000061913
Ensembl peptide - ENSMUSP00000119610
Ensembl peptide - ENSMUSP00000136585
NCBI entrez gene - 116748     See in Manteia.
MGI - MGI:2151045
RefSeq - XM_006502687
RefSeq - NM_001163266
RefSeq - NM_138721
RefSeq - XM_006502686
RefSeq Peptide - NP_620046
RefSeq Peptide - NP_001156738
swissprot - Q3UPL7
swissprot - Q8QZX5
swissprot - A8Y5G9
Ensembl - ENSMUSG00000050188
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm10ENSDARG00000101222Danio rerio
 LSM10ENSGALG00000002127Gallus gallus
 LSM10ENSG00000181817Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:1900087 positive regulation of G1/S transition of mitotic cell cycle ISS
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005683 U7 snRNP ISO
 cellular_componentGO:0015030 Cajal body ISS
 cellular_componentGO:0016604 nuclear body ISO
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0017069 snRNA binding ISO
 molecular_functionGO:0071208 histone pre-mRNA DCP binding IDA
 molecular_functionGO:0071209 U7 snRNA binding ISO


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP independent Processing of Histone Pre-mRNAs
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr