ENSG00000182173


Homo sapiens

Features
Gene ID: ENSG00000182173
  
Biological name :TSEN54
  
Synonyms : Q7Z6J9 / tRNA splicing endonuclease subunit 54 / TSEN54
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: q25.1
Gene start: 75516060
Gene end: 75524739
  
Corresponding Affymetrix probe sets: 1558304_s_at (Human Genome U133 Plus 2.0 Array)   225879_at (Human Genome U133 Plus 2.0 Array)   241402_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000461928
Ensembl peptide - ENSP00000464335
Ensembl peptide - ENSP00000463619
Ensembl peptide - ENSP00000327487
Ensembl peptide - ENSP00000406559
Ensembl peptide - ENSP00000438169
NCBI entrez gene - 283989     See in Manteia.
OMIM - 608755
RefSeq - NM_207346
RefSeq - XM_005257229
RefSeq Peptide - NP_997229
swissprot - E7EN92
swissprot - Q7Z6J9
swissprot - J9JIH8
swissprot - J3KRC5
swissprot - J3QLM6
swissprot - J3QRQ5
Ensembl - ENSG00000182173
  
Related genetic diseases (OMIM): 225753 - Pontocerebellar hypoplasia type 4, 225753
  277470 - Pontocerebellar hypoplasia type 2A, 277470
  610204 - ?Pontocerebellar hypoplasia type 5, 610204
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tsen54ENSDARG00000036844Danio rerio
 Q8C2A2ENSMUSG00000020781Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR024336  tRNA-splicing endonuclease, subunit Sen54, N-terminal
 IPR024337  tRNA-splicing endonuclease, subunit Sen54


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000379 tRNA-type intron splice site recognition and cleavage IBA
 biological_processGO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0090501 RNA phosphodiester bond hydrolysis IEA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 cellular_componentGO:0000214 tRNA-intron endonuclease complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0000213 tRNA-intron endonuclease activity IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
tRNA processing in the nucleus


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
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 HP:0000711 Restlessness 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001522 Death in infancy 
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 HP:0001561 Polyhydramnios 
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 HP:0001939 Metabolism abnormality 
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 HP:0002033 Poor suck "An inadequate sucking reflex, resulting in the difficult of newborns to be breast-fed." [HPO:curators]
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002171 Gliosis 
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 HP:0002179 Opisthotonus 
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 HP:0002365 Hypoplasia of the brainstem 
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 HP:0002518 Periventricular white matter changes 
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 HP:0002803 Congenital contractures 
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 HP:0003577 Onset at birth 
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 HP:0003819 Death in childhood 
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 HP:0006955 Olivopontocerebellar hypoplasia 
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 HP:0007001 Loss of purkinje cells in the cerebellar vermis 
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 HP:0007105 Infantile encephalopathy 
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 HP:0007308 Extrapyramidal dyskinesia 
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 HP:0007772 Impaired smooth pursuit in adult patients 
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 HP:0008872 Feeding problems in infancy 
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 HP:0011344 Severe global developmental delay "A severe delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
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 HP:0012110 Hypoplasia of the pons "Underdevelopment of the `pons` (FMA:67943)." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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