ENSMUSG00000020781


Mus musculus

Features
Gene ID: ENSMUSG00000020781
  
Biological name :Tsen54
  
Synonyms : Q8C2A2 / tRNA-splicing endonuclease subunit Sen54 / Tsen54
  
Possible biological names infered from orthology : Q7Z6J9 / tRNA splicing endonuclease subunit 54
  
Species: Mus musculus
  
Chr. number: 11
Strand: 1
Band: E2
Gene start: 115814724
Gene end: 115823094
  
Corresponding Affymetrix probe sets: 10382610 (MoGene1.0st)   1429529_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000118342
Ensembl peptide - ENSMUSP00000120506
Ensembl peptide - ENSMUSP00000021134
Ensembl peptide - ENSMUSP00000102090
Ensembl peptide - ENSMUSP00000116955
NCBI entrez gene - 76265     See in Manteia.
MGI - MGI:1923515
RefSeq - XM_006534420
RefSeq - XM_006534418
RefSeq - XM_006534419
RefSeq - XM_006534417
RefSeq - XM_006534415
RefSeq - NM_029557
RefSeq Peptide - NP_083833
swissprot - Q8C2A2
swissprot - F6X5E8
swissprot - B0QZP4
swissprot - B1ATA6
Ensembl - ENSMUSG00000020781
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tsen54ENSDARG00000036844Danio rerio
 Q7Z6J9ENSG00000182173Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR024336  tRNA-splicing endonuclease, subunit Sen54, N-terminal
 IPR024337  tRNA-splicing endonuclease, subunit Sen54


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000379 tRNA-type intron splice site recognition and cleavage IBA
 biological_processGO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation ISO
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0090501 RNA phosphodiester bond hydrolysis IEA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 cellular_componentGO:0000214 tRNA-intron endonuclease complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0000213 tRNA-intron endonuclease activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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