ENSG00000188603


Homo sapiens

Features
Gene ID: ENSG00000188603
  
Biological name :CLN3
  
Synonyms : CLN3 / CLN3, battenin / Q13286
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: p12.1
Gene start: 28474111
Gene end: 28495575
  
Corresponding Affymetrix probe sets: 209275_s_at (Human Genome U133 Plus 2.0 Array)   210859_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000489627
Ensembl peptide - ENSP00000490932
Ensembl peptide - ENSP00000490670
Ensembl peptide - ENSP00000490505
Ensembl peptide - ENSP00000490394
Ensembl peptide - ENSP00000490363
Ensembl peptide - ENSP00000490248
Ensembl peptide - ENSP00000490206
Ensembl peptide - ENSP00000490155
Ensembl peptide - ENSP00000490105
Ensembl peptide - ENSP00000490049
Ensembl peptide - ENSP00000490034
Ensembl peptide - ENSP00000489952
Ensembl peptide - ENSP00000329171
Ensembl peptide - ENSP00000347660
Ensembl peptide - ENSP00000350457
Ensembl peptide - ENSP00000350523
Ensembl peptide - ENSP00000353073
Ensembl peptide - ENSP00000353116
Ensembl peptide - ENSP00000379014
Ensembl peptide - ENSP00000454229
Ensembl peptide - ENSP00000454466
Ensembl peptide - ENSP00000454680
Ensembl peptide - ENSP00000454899
Ensembl peptide - ENSP00000455342
Ensembl peptide - ENSP00000455365
Ensembl peptide - ENSP00000455387
Ensembl peptide - ENSP00000455549
Ensembl peptide - ENSP00000455603
Ensembl peptide - ENSP00000456013
Ensembl peptide - ENSP00000456117
Ensembl peptide - ENSP00000456122
Ensembl peptide - ENSP00000456414
Ensembl peptide - ENSP00000456693
Ensembl peptide - ENSP00000457615
Ensembl peptide - ENSP00000458015
Ensembl peptide - ENSP00000486178
Ensembl peptide - ENSP00000486616
NCBI entrez gene - 1201     See in Manteia.
OMIM - 607042
RefSeq - NM_001286110
RefSeq - NM_000086
RefSeq - NM_001042432
RefSeq - NM_001286104
RefSeq - NM_001286105
RefSeq - NM_001286109
RefSeq Peptide - NP_000077
RefSeq Peptide - NP_001273033
RefSeq Peptide - NP_001273034
RefSeq Peptide - NP_001273038
RefSeq Peptide - NP_001273039
RefSeq Peptide - NP_001035897
swissprot - H3BNK7
swissprot - H3BPL0
swissprot - H3BQ48
swissprot - H3BR00
swissprot - H3BR84
swissprot - H3BRU8
swissprot - H3BUF8
swissprot - O95086
swissprot - O95090
swissprot - Q13286
swissprot - Q2TA70
swissprot - Q9UBD8
swissprot - Q9UBH5
swissprot - B4DFF3
swissprot - Q9UP10
swissprot - A0A1B0GWH8
swissprot - A0A1B0GW34
swissprot - A0A1B0GV71
swissprot - A0A1B0GV41
swissprot - A0A1B0GUU4
swissprot - A0A1B0GUB1
swissprot - A0A0D9SFH9
swissprot - A0A0D9SF04
swissprot - A0A0A0MRC7
swissprot - A0A024QZB8
swissprot - F6TI76
swissprot - H3BMN4
Ensembl - ENSG00000188603
  
Related genetic diseases (OMIM): 204200 - Ceroid lipofuscinosis, neuronal, 3, 204200
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cln3ENSDARG00000037865Danio rerio
 Cln3ENSMUSG00000030720Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AC138894.1ENSG00000261832100


Protein motifs (from Interpro)
Interpro ID Name
 IPR003492  Batten"s disease protein Cln3
 IPR018460  Batten"s disease protein Cln3, subgroup
 IPR036259  MFS transporter superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001508 action potential ISS
 biological_processGO:0001575 globoside metabolic process IMP
 biological_processGO:0006520 cellular amino acid metabolic process ISS
 biological_processGO:0006672 ceramide metabolic process IDA
 biological_processGO:0006678 glucosylceramide metabolic process IMP
 biological_processGO:0006681 galactosylceramide metabolic process IMP
 biological_processGO:0006684 sphingomyelin metabolic process IMP
 biological_processGO:0006898 receptor-mediated endocytosis IMP
 biological_processGO:0007034 vacuolar transport IBA
 biological_processGO:0007040 lysosome organization ISS
 biological_processGO:0007042 lysosomal lumen acidification IMP
 biological_processGO:0008306 associative learning ISS
 biological_processGO:0015809 arginine transport IDA
 biological_processGO:0016236 macroautophagy NAS
 biological_processGO:0016485 protein processing ISS
 biological_processGO:0030163 protein catabolic process NAS
 biological_processGO:0035235 ionotropic glutamate receptor signaling pathway ISS
 biological_processGO:0035752 lysosomal lumen pH elevation IDA
 biological_processGO:0042133 neurotransmitter metabolic process ISS
 biological_processGO:0042987 amyloid precursor protein catabolic process IDA
 biological_processGO:0043066 negative regulation of apoptotic process IMP
 biological_processGO:0043086 negative regulation of catalytic activity ISS
 biological_processGO:0043524 negative regulation of neuron apoptotic process ISS
 biological_processGO:0045861 negative regulation of proteolysis ISS
 biological_processGO:0047496 vesicle transport along microtubule IMP
 biological_processGO:0050885 neuromuscular process controlling balance ISS
 biological_processGO:0051480 regulation of cytosolic calcium ion concentration ISS
 biological_processGO:0061024 membrane organization ISS
 biological_processGO:0097352 autophagosome maturation ISS
 cellular_componentGO:0000139 Golgi membrane IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005739 mitochondrion TAS
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IDA
 cellular_componentGO:0005770 late endosome ISS
 cellular_componentGO:0005776 autophagosome ISS
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0005795 Golgi stack IDA
 cellular_componentGO:0005802 trans-Golgi network IDA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0005901 caveola IDA
 cellular_componentGO:0008021 synaptic vesicle IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030176 integral component of endoplasmic reticulum membrane IDA
 cellular_componentGO:0043005 neuron projection IDA
 cellular_componentGO:0045121 membrane raft IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0051082 unfolded protein binding TAS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000529 Progressive visual loss 
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 HP:0000550 Abolished electroretinogram (ERG) 
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 HP:0000608 Macular degeneration 
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 HP:0000618 Blindness 
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 HP:0000648 Optic atrophy 
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000726 Dementia 
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 HP:0000739 Anxiety 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001300 Parkinsonism 
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 HP:0001317 Abnormality of the cerebellum 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001922 Vacuolated lymphocytes 
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 HP:0002059 Cerebral atrophy 
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 HP:0002074 Autofluorescent lipopigment in neurons 
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 HP:0002361 Psychomotor degeneration 
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 HP:0002505 Progressive inability to walk 
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 HP:0003205 Curvilinear profiles ultrastructurally 
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 HP:0003208 Fingerprint profiles ultrastructurally 
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 HP:0003463 Lipopigment in extraneuronal cells 
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 HP:0005157 Concentric hypertrophic cardiomyopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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