ENSG00000196511


Homo sapiens

Features
Gene ID: ENSG00000196511
  
Biological name :TPK1
  
Synonyms : Q9H3S4 / thiamin pyrophosphokinase 1 / TPK1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: q35
Gene start: 144451941
Gene end: 144836395
  
Corresponding Affymetrix probe sets: 221218_s_at (Human Genome U133 Plus 2.0 Array)   223686_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000449909
Ensembl peptide - ENSP00000448655
Ensembl peptide - ENSP00000450028
Ensembl peptide - ENSP00000491869
Ensembl peptide - ENSP00000353165
Ensembl peptide - ENSP00000367338
Ensembl peptide - ENSP00000367339
Ensembl peptide - ENSP00000438813
NCBI entrez gene - 27010     See in Manteia.
OMIM - 606370
RefSeq - XM_017011985
RefSeq - XM_017011969
RefSeq - XM_017011970
RefSeq - XM_017011971
RefSeq - XM_017011972
RefSeq - XM_017011973
RefSeq - XM_017011974
RefSeq - XM_017011976
RefSeq - XM_017011977
RefSeq - XM_017011978
RefSeq - XM_017011979
RefSeq - XM_017011982
RefSeq - XM_017011983
RefSeq - XM_017011984
RefSeq - NM_001042482
RefSeq - NM_001350879
RefSeq - NM_022445
RefSeq - XM_005249970
RefSeq - XM_011516031
RefSeq - XM_011516032
RefSeq - XM_011516033
RefSeq - XM_011516034
RefSeq - XM_011516035
RefSeq - XM_011516037
RefSeq - XM_011516040
RefSeq - XM_011516041
RefSeq - XM_011516043
RefSeq - XM_011516044
RefSeq - XM_011516046
RefSeq Peptide - NP_001035947
RefSeq Peptide - NP_001337808
RefSeq Peptide - NP_001337809
RefSeq Peptide - NP_071890
swissprot - F8VVJ1
swissprot - F8WCM7
swissprot - A0A1W2PQB3
swissprot - Q9H3S4
swissprot - A0A090N8Y0
swissprot - Q6ZQX6
swissprot - F5GZG6
swissprot - F8VPB3
swissprot - F8VRJ6
Ensembl - ENSG00000196511
  
Related genetic diseases (OMIM): 614458 - Thiamine metabolism dysfunction syndrome 5 (episodic encephalopathy type), 614458
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tpk1ENSDARG00000038040Danio rerio
 TPK1ENSGALG00000040298Gallus gallus
 Tpk1ENSMUSG00000029735Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006282  Thiamin pyrophosphokinase
 IPR007371  Thiamin pyrophosphokinase, catalytic domain
 IPR007373  Thiamin pyrophosphokinase, thiamin-binding domain
 IPR016966  Thiamin pyrophosphokinase, eukaryotic
 IPR036371  Thiamin pyrophosphokinase, thiamin-binding domain superfamily
 IPR036759  Thiamin pyrophosphokinase, catalytic domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006772 thiamine metabolic process IEA
 biological_processGO:0009229 thiamine diphosphate biosynthetic process IEA
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0042723 thiamine-containing compound metabolic process TAS
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004788 thiamine diphosphokinase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0030975 thiamine binding IEA


Pathways (from Reactome)
Pathway description
Vitamin B1 (thiamin) metabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001712 Left ventricular hypertrophy 
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 HP:0002321 Vertigo "An abnormal sensation of spinning while the body is actually stationary." [HPO:curators]
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 HP:0002371 Loss of speech 
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003812 Phenotypic variability 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000196511 TPK1 / Q9H3S4 / thiamin pyrophosphokinase 1  / complex






 

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contact: otassy@igbmc.fr