ENSG00000196743


Homo sapiens

Features
Gene ID: ENSG00000196743
  
Biological name :GM2A
  
Synonyms : GM2A / GM2 ganglioside activator / P17900
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q33.1
Gene start: 151212150
Gene end: 151270440
  
Corresponding Affymetrix probe sets: 209727_at (Human Genome U133 Plus 2.0 Array)   212737_at (Human Genome U133 Plus 2.0 Array)   215890_at (Human Genome U133 Plus 2.0 Array)   215891_s_at (Human Genome U133 Plus 2.0 Array)   235678_at (Human Genome U133 Plus 2.0 Array)   33646_g_at (Human Genome U133 Plus 2.0 Array)   35820_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000430541
Ensembl peptide - ENSP00000349687
Ensembl peptide - ENSP00000429100
NCBI entrez gene - 2760     See in Manteia.
OMIM - 613109
RefSeq - NM_001167607
RefSeq - NM_000405
RefSeq Peptide - NP_000396
RefSeq Peptide - NP_001161079
swissprot - P17900
swissprot - E5RJD0
swissprot - H0YBY3
Ensembl - ENSG00000196743
  
Related genetic diseases (OMIM): 272750 - GM2-gangliosidosis, AB variant, 272750
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gm2aENSDARG00000088439Danio rerio
 LO018208.1ENSDARG00000107431Danio rerio
 GM2AENSGALG00000027534Gallus gallus
 Gm2aENSMUSG00000000594Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003172  MD-2-related lipid-recognition domain
 IPR028996  Ganglioside GM2 activator
 IPR036846  GM2-AP, lipid-recognition domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001573 ganglioside metabolic process IEA
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006665 sphingolipid metabolic process IEA
 biological_processGO:0006687 glycosphingolipid metabolic process TAS
 biological_processGO:0006689 ganglioside catabolic process IEA
 biological_processGO:0006869 lipid transport IEA
 biological_processGO:0007611 learning or memory IEA
 biological_processGO:0009313 oligosaccharide catabolic process IEA
 biological_processGO:0019915 lipid storage IEA
 biological_processGO:0043085 positive regulation of catalytic activity IEA
 biological_processGO:0043312 neutrophil degranulation TAS
 biological_processGO:0050877 nervous system process IEA
 biological_processGO:0050885 neuromuscular process controlling balance IEA
 biological_processGO:0051345 positive regulation of hydrolase activity IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005889 potassium:proton exchanging ATPase complex IEA
 cellular_componentGO:0009898 cytoplasmic side of plasma membrane IEA
 cellular_componentGO:0035578 azurophil granule lumen TAS
 cellular_componentGO:0043202 lysosomal lumen TAS
 cellular_componentGO:0045179 apical cortex IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0004563 beta-N-acetylhexosaminidase activity IEA
 molecular_functionGO:0005319 lipid transporter activity IEA
 molecular_functionGO:0008047 enzyme activator activity IEA
 molecular_functionGO:0016004 phospholipase activator activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0030290 sphingolipid activator protein activity TAS
 molecular_functionGO:0032428 beta-N-acetylgalactosaminidase activity IEA


Pathways (from Reactome)
Pathway description
Glycosphingolipid metabolism
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000719 Inappropriate behavior 
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 HP:0000726 Dementia 
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 HP:0000739 Anxiety 
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 HP:0000741 Apathy 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001285 Spastic tetraparesis "Spastic weakness affecting all four limbs." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002072 Chorea "Chorea (Greek for dance ) refers to widespread arrhythmic involuntary movements of a forcible, jerky and restless fashion." [HPO:curators]
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 HP:0002180 Neurodegeneration 
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 HP:0002200 Pseudobulbar signs "Pseudobulbar signs result from injury to an upper motor neuron lesion to the corticobulbar pathways in the pyramidal tract. Patients have difficulty chewing, swallowing and demonstrate slurred speach (often initial presentation) as well as abnormal behavioral symptoms such as inappropriate emotional outbursts of uncontrolled laughter or weeping etc." [HPO:sdoelken]
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 HP:0002267 Exaggerated startle response "An exaggerated startle reaction in response to a sudden unexpected visual or acoustic stimulus, or a quick movement near the face." [HPO:curators]
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 HP:0002371 Loss of speech 
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 HP:0002376 Developmental regression 
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 HP:0002421 Poor head control 
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 HP:0002476 Primitive reflexes (palmomental, snout, glabellar) 
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 HP:0002478 Progressive spastic quadriplegia 
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 HP:0002835 Aspiration 
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 HP:0003470 Paralysis "Paralysis of voluntary muscles means loss of contraction due to interruption of one or more motor pathways from the brain to the muscle fibers. Although the word paralysis is often used interchangeably to mean either complete or partial loss of muscle strength, it is preferable to use paralysis or plegia for complete or severe loss of muscle strength, and paresis for partial or slight loss. Motor paralysis results from deficits of the upper motor neurons (corticospinal, corticobulbar, or subcorticospinal). Motor paralysis is often accompanied by an impairment in the facility of movement." [HPO:curators]
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 HP:0003495 GM2-ganglioside accumulation 
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 HP:0003828 Variable expressivity 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0007256 Mild pyramidal signs 
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 HP:0008897 Growth retardation, progressive 
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0009062 Hypotonia, axial, in infancy "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk and with onset in infancy." [HPO:curators]
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 HP:0010729 Cherry red spot of the macula 
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 HP:0010780 Hyperacusis 
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 HP:0012547 Abnormal involuntary eye movements "Anomalous movements of the eyes that occur without the subject wanting them to happen." [HPO:probinson]
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 HP:0030081 Punctate periventricular T2 hyperintense foci "Multiple pointlike areas of high T2 signal observed upon magnetic resonance imaging of the periventricular cerebral white matter." []
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 HP:0030904 Glabellar reflex "A type of primitive reflex that is elicited by repetitive tapping on the forehead. Normal subjects usually blink in response to the first several taps, but if blinking persists, the response is abnormal and considered to be a sign of frontal release. Persistent blinking is also known as Myerson s sign." [] {comment="HPO:probinson"}
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000049860 HEXB / P07686 / hexosaminidase subunit beta  / reaction
 ENSG00000213614 HEXA / P06865 / hexosaminidase subunit alpha  / reaction






 

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