ENSG00000197563


Homo sapiens

Features
Gene ID: ENSG00000197563
  
Biological name :PIGN
  
Synonyms : O95427 / phosphatidylinositol glycan anchor biosynthesis class N / PIGN
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 18
Strand: -1
Band: q21.33
Gene start: 61905255
Gene end: 62187118
  
Corresponding Affymetrix probe sets: 219048_at (Human Genome U133 Plus 2.0 Array)   232101_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000491415
Ensembl peptide - ENSP00000492804
Ensembl peptide - ENSP00000492783
Ensembl peptide - ENSP00000492660
Ensembl peptide - ENSP00000492592
Ensembl peptide - ENSP00000492474
Ensembl peptide - ENSP00000492233
Ensembl peptide - ENSP00000492051
Ensembl peptide - ENSP00000492017
Ensembl peptide - ENSP00000491963
Ensembl peptide - ENSP00000491929
Ensembl peptide - ENSP00000491850
Ensembl peptide - ENSP00000491811
Ensembl peptide - ENSP00000491628
Ensembl peptide - ENSP00000491620
Ensembl peptide - ENSP00000491549
Ensembl peptide - ENSP00000491525
Ensembl peptide - ENSP00000491475
Ensembl peptide - ENSP00000491459
Ensembl peptide - ENSP00000350263
Ensembl peptide - ENSP00000383188
Ensembl peptide - ENSP00000464707
Ensembl peptide - ENSP00000465241
Ensembl peptide - ENSP00000465506
Ensembl peptide - ENSP00000465897
Ensembl peptide - ENSP00000466035
Ensembl peptide - ENSP00000466462
Ensembl peptide - ENSP00000466883
Ensembl peptide - ENSP00000466985
Ensembl peptide - ENSP00000467410
Ensembl peptide - ENSP00000467812
Ensembl peptide - ENSP00000468456
Ensembl peptide - ENSP00000468721
Ensembl peptide - ENSP00000490965
Ensembl peptide - ENSP00000490970
Ensembl peptide - ENSP00000491010
Ensembl peptide - ENSP00000491013
Ensembl peptide - ENSP00000491022
Ensembl peptide - ENSP00000491111
Ensembl peptide - ENSP00000491270
Ensembl peptide - ENSP00000491318
NCBI entrez gene - 23556     See in Manteia.
OMIM - 606097
RefSeq - NM_176787
RefSeq - XM_017025686
RefSeq - XM_017025685
RefSeq - NM_012327
RefSeq - XM_011525889
RefSeq - XM_011525890
RefSeq - XM_011525891
RefSeq - XM_011525892
RefSeq - XM_011525893
RefSeq - XM_011525894
RefSeq - XM_011525895
RefSeq - XM_011525896
RefSeq - XM_011525898
RefSeq Peptide - NP_789744
RefSeq Peptide - NP_036459
swissprot - A0A024R2C3
swissprot - K7EID9
swissprot - K7EJM6
swissprot - K7EL34
swissprot - K7ELE1
swissprot - K7EMD7
swissprot - K7ENK2
swissprot - K7EPJ2
swissprot - K7EQG0
swissprot - K7ERX5
swissprot - A0A1W2PS19
swissprot - O95427
swissprot - K7ESH9
swissprot - A0A1W2PRH3
swissprot - A0A1W2PR74
swissprot - A0A1W2PQZ1
swissprot - A0A1W2PQR8
swissprot - A0A1W2PQP4
swissprot - A0A1W2PQA9
swissprot - A0A1W2PQ49
swissprot - A0A1W2PPR7
swissprot - A0A1W2PPK6
swissprot - A0A1W2PPB6
swissprot - A0A1W2PPA0
swissprot - A0A1W2PNW5
swissprot - A0A1W2PNR0
swissprot - A0A1W2PNQ8
swissprot - A0A1W2PNH8
Ensembl - ENSG00000197563
  
Related genetic diseases (OMIM): 614080 - Multiple congenital anomalies-hypotonia-seizures syndrome 1, 614080
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pignENSDARG00000077532Danio rerio
 PIGNENSGALG00000012903Gallus gallus
 PignENSMUSG00000056536Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000917  Sulfatase, N-terminal
 IPR002591  Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase
 IPR007070  GPI ethanolamine phosphate transferase 1
 IPR017849  Alkaline phosphatase-like, alpha/beta/alpha
 IPR017850  Alkaline-phosphatase-like, core domain superfamily
 IPR017852  GPI ethanolamine phosphate transferase 1, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006506 GPI anchor biosynthetic process IEA
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0016254 preassembly of GPI anchor in ER membrane TAS
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0008484 sulfuric ester hydrolase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0051377 mannose-ethanolamine phosphotransferase activity IEA


Pathways (from Reactome)
Pathway description
Synthesis of glycosylphosphatidylinositol (GPI)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000034 Hydrocele 
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000126 Hydronephrosis 
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 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000161 Median cleft lip "A type of `cleft lip` (HP:0000204) presenting as a midline (median) gap in the upper lip." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000194 Open mouth 
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000233 Thin vermillion border 
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000280 Coarse facial features 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000341 Narrow forehead "An abnormally reduced side-to-side width of the forehead." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000378 Cup-shaped ears "Small auricles that grow forward over the meatus (ear canal)." [HPO:curators]
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 HP:0000396 Overfolded helices "A condition in which the upper edge of the ear is folded over to a greater degree than normal." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000470 Short neck 
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 HP:0000474 Excess nuchal skin 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000646 Amblyopia "Reduced visual acuity that is uncorrectable by lenses in the absence of detectable anatomic defects in the eye or visual pathways. Ambylopia can result from visual deprivation during the critical period of development of visual abilities which lasts to about the age of 8 years. Thus, ambylopia can result from strabismus, anisometropia, or high hypermetropia in there is a failure to form a focused image in one or both eyes." [HPO:curators]
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 HP:0000774 Narrow chest 
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 HP:0000776 Diaphragmatic hernia "Diaphragmatic hernia is the result of a developmental defect causing an abnormal opening in the diaphragm, through which abdominal organs (stomach, spleen, liver, and intestines) can protrude into the thoracic cavity. This usually causes respiratory distress in the newborn period." [HPO:curators]
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 HP:0000813 Bicornuate uterus 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001266 Choreoathetosis 
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 HP:0001272 Cerebellar atrophy 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001305 Dandy-Walker malformation "A congenital brain malformation typically characterized by incomplete formation of the cerebellar vermis, dilation of the fourth ventricle, and enlargement of the posterior fossa. In layman s terms, Dandy Walker malformation is a cyst in the cerebellum (typically symmetrical) that is involved with the fourth ventricle. This may interfere with the body s ability to drain cerebrospinal fluid from the brain, resulting in hydrocephalus. Dandy Walker cysts are formed during early embryonic development, while the brain forms. The cyst in the cerebellum typically has several blood vessels running through it connecting to the brain, thereby prohibiting surgical removal." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001344 Absent speech development 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001539 Omphalocele 
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 HP:0001561 Polyhydramnios 
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001671 Abnormality of the cardiac septa 
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 HP:0001804 Hypoplastic fingernails "Underdeveloped fingernails." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002025 Anal stenosis "Abnormal narrowing of the anal opening." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002089 Pulmonary hypoplasia 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002247 Duodenal atresia "A developmental defect resulting in complete obliteration of the duodenal lumen, that is, an abnormal closure of the duodenum." [HPO:curator]
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 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
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 HP:0002265 Large fleshy ears 
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 HP:0002566 Intestinal malrotation "An abnormality of the intestinal rotation and fixation that normally occurs during the development of the gut. This can lead to volvulus, or twisting of the intestine that causes obstruction and necrosis." [HPO:curators]
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003577 Onset at birth 
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 HP:0003828 Variable expressivity 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004397 Ectopic anus "Abnormal displacement or malposition of the anus." [HPO:curators]
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0006610 Wide intermamillary distance 
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 HP:0006709 Aplasia/Hypoplasia of the nipples 
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 HP:0007957 Variable degree of corneal opacities 
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 HP:0009882 Hypoplasia of the distal phalanges of the hand 
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 HP:0010804 Tented upper lip vermilion "Triangular appearance of the oral aperture with the apex in the midpoint of the upper vermilion and the lower vermilion forming the base." [pmid:19125428]
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 HP:0011344 Severe global developmental delay "A severe delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
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 HP:0012303 Abnormality of the aortic arch "An anomaly of the `arch of aorta`(FMA:3768)." [HPO:probinson]
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 HP:0100335 Non-midline cleft lip 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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