ENSG00000198028


Homo sapiens

Features
Gene ID: ENSG00000198028
  
Biological name :ZNF560
  
Synonyms : Q96MR9 / zinc finger protein 560 / ZNF560
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: -1
Band: p13.2
Gene start: 9466507
Gene end: 9498607
  
Corresponding Affymetrix probe sets: 1553276_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000301480
NCBI entrez gene - 147741     See in Manteia.
RefSeq - NM_152476
RefSeq - XM_017026330
RefSeq - NM_001351678
RefSeq - XM_017026327
RefSeq - XM_017026328
RefSeq - XM_017026329
RefSeq - XM_011527696
RefSeq - XM_011527697
RefSeq Peptide - NP_689689
RefSeq Peptide - NP_001338607
swissprot - Q96MR9
Ensembl - ENSG00000198028
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Zfp26ENSMUSG00000063108Mus musculus
 Zfp560ENSMUSG00000045519Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q96MU6 / ZNF778 / zinc finger protein 778ENSG0000017010043
Q147U1 / ZNF846 / zinc finger protein 846ENSG0000019660533
Q14584 / ZNF266 / zinc finger protein 266ENSG0000017465232
Q9BUY5 / ZNF426 / zinc finger protein 426ENSG0000013081831
Q9BR84 / ZNF559 / zinc finger protein 559ENSG0000018832130
Q8N587 / ZNF561 / zinc finger protein 561ENSG0000017146924
Q6V9R5 / ZNF562 / zinc finger protein 562ENSG0000017146622
P58317 / ZNF121 / zinc finger protein 121ENSG0000019796122


Protein motifs (from Interpro)
Interpro ID Name
 IPR001909  Krueppel-associated box
 IPR013087  Zinc finger C2H2-type
 IPR036051  KRAB domain superfamily
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Generic Transcription Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr