ENSG00000198198


Homo sapiens

Features
Gene ID: ENSG00000198198
  
Biological name :SZT2
  
Synonyms : Q5T011 / SZT2 / SZT2, KICSTOR complex subunit
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p34.2
Gene start: 43389882
Gene end: 43454247
  
Corresponding Affymetrix probe sets: 1569709_at (Human Genome U133 Plus 2.0 Array)   203900_at (Human Genome U133 Plus 2.0 Array)   215364_s_at (Human Genome U133 Plus 2.0 Array)   231249_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000386070
Ensembl peptide - ENSP00000492726
Ensembl peptide - ENSP00000492385
Ensembl peptide - ENSP00000489255
Ensembl peptide - ENSP00000457168
Ensembl peptide - ENSP00000361528
NCBI entrez gene - 23334     See in Manteia.
OMIM - 615463
RefSeq - XM_017000821
RefSeq - XM_006710501
RefSeq - XM_011541106
RefSeq - XM_011541107
RefSeq - XM_017000819
RefSeq - XM_017000820
RefSeq - NM_015284
RefSeq - XM_005270686
RefSeq Peptide - NP_056099
swissprot - A0A0C4DG05
swissprot - A0A1W2PQY2
swissprot - A0A1W2PRY5
swissprot - Q5T011
Ensembl - ENSG00000198198
  
Related genetic diseases (OMIM): 615476 - Epileptic encephalopathy, early infantile, 18, 615476
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01056637.1ENSDARG00000100203Danio rerio
 SZT2ENSGALG00000028561Gallus gallus
 Szt2ENSMUSG00000033253Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
No match


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007417 central nervous system development IEA
 biological_processGO:0009791 post-embryonic development IEA
 biological_processGO:0021540 corpus callosum morphogenesis IMP
 biological_processGO:0031667 response to nutrient levels IEA
 biological_processGO:0034198 cellular response to amino acid starvation IMP
 biological_processGO:0042149 cellular response to glucose starvation IMP
 biological_processGO:0043473 pigmentation IEA
 biological_processGO:0061462 protein localization to lysosome IMP
 biological_processGO:1901668 regulation of superoxide dismutase activity ISS
 biological_processGO:1904262 negative regulation of TORC1 signaling IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane IEA
 cellular_componentGO:0005777 peroxisome IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0061700 GATOR2 complex IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0140007 KICSTOR complex IDA
 cellular_componentGO:1990130 GATOR1 complex IDA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0002121 Absence seizures "Recurrent absence seizures are `generalized seizures` (HP:0002197) that are characterized by a sudden cessation of motor activity and by a blank facial expression with flickering of the eyelids. There is no convulsive muscular activity or loss of postural control." [HPO:probinson]
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002553 Arched eyebrows 
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 HP:0007074 Thick corpus callosum 
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 HP:0007359 Partial seizures "Recurrent partial `seizures` (HP:0001250). In a partial seizure, the electrical disturbance is limited to one part or side of the brain. That is, partial epilepsies are epileptic disorders in which clinical or laboratory findings disclose a localized origin of seizures." [HPO:curators]
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr