ENSG00000198513


Homo sapiens

Features
Gene ID: ENSG00000198513
  
Biological name :ATL1
  
Synonyms : ATL1 / atlastin GTPase 1 / Q8WXF7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: 1
Band: q22.1
Gene start: 50532509
Gene end: 50633068
  
Corresponding Affymetrix probe sets: 223340_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000450989
Ensembl peptide - ENSP00000451015
Ensembl peptide - ENSP00000451100
Ensembl peptide - ENSP00000452074
Ensembl peptide - ENSP00000452506
Ensembl peptide - ENSP00000351155
Ensembl peptide - ENSP00000413675
Ensembl peptide - ENSP00000450897
NCBI entrez gene - 51062     See in Manteia.
OMIM - 606439
RefSeq - NM_001127713
RefSeq - NM_015915
RefSeq - NM_181598
RefSeq Peptide - NP_001121185
RefSeq Peptide - NP_056999
RefSeq Peptide - NP_853629
swissprot - Q8WXF7
swissprot - A0A0S2Z5A2
swissprot - A0A0S2Z5B0
swissprot - G3V321
swissprot - G3V334
swissprot - G3V4Y8
swissprot - G3V5T4
swissprot - H0YJ65
swissprot - H0YJA7
Ensembl - ENSG00000198513
  
Related genetic diseases (OMIM): 182600 - Spastic paraplegia 3A, autosomal dominant, 182600
  613708 - Neuropathy, hereditary sensory, type ID, 613708
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atl1ENSDARG00000060481Danio rerio
 ATL1ENSGALG00000012339Gallus gallus
 Atl1ENSMUSG00000021066Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ATL2 / Q8NHH9 / atlastin GTPase 2ENSG0000011978765
ATL3 / Q6DD88 / atlastin GTPase 3ENSG0000018474360
Q9ULX5 / RNF112 / ring finger protein 112ENSG0000012848219


Protein motifs (from Interpro)
Interpro ID Name
 IPR015894  Guanylate-binding protein, N-terminal
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR030386  GB1/RHD3-type guanine nucleotide-binding (G) domain
 IPR036543  Guanylate-binding protein, C-terminal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007029 endoplasmic reticulum organization IDA
 biological_processGO:0007409 axonogenesis ISS
 biological_processGO:0051260 protein homooligomerization IDA
 biological_processGO:1990809 endoplasmic reticulum tubular network membrane organization IMP
 cellular_componentGO:0000137 Golgi cis cisterna ISS
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane ISS
 cellular_componentGO:0005794 Golgi apparatus ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0071782 endoplasmic reticulum tubular network ISS
 cellular_componentGO:0098826 endoplasmic reticulum tubular network membrane IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0042802 identical protein binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000012 Urinary urgency 
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 HP:0000020 Urinary incontinence "Loss of the ability to control the urinary bladder leading to involuntary urination." [HPO:sdoelken]
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 HP:0001218 Autoamputation 
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001258 Spastic paraplegia 
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001510 Growth retardation 
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 HP:0001761 Pes cavus 
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 HP:0002061 Lower limb spasticity 
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 HP:0002063 Rigidity 
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 HP:0002064 Spastic gait 
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 HP:0002067 Bradykinesia "Bradykinesia literally means slow movement, and is used clinically to denote a slowness in the execution of movement (in contrast to hypokinesia, which is used to refer to slowness in the initiation of movement)." [HPO:curators]
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002164 Nail dysplasia 
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 HP:0002166 Decreased vibratory sense in the lower limbs "A decrease in the ability to perceive vibration in the legs." [HPO:curators]
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 HP:0002314 Degeneration of the lateral corticospinal tracts 
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 HP:0002359 Frequent falls 
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 HP:0002395 Lower limb hyperreflexia 
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 HP:0002495 Impaired vibratory sense "A decrease in the ability to perceive vibration. Clinically, this is usually tested with a tuning fork which vibrates at 128 Hz and is applied to bony prominences such as the malleoli at the ankles or the metacarpal-phalangeal joints. There is a slow decay of vibration from the tuning fork. The degree of vibratory sense loss can be crudely estimated by counting the number of seconds that the examiner can perceive the vibration longer than the patient." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002839 Sphincter disturbances (bladder) 
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 HP:0002936 Distal sensory impairment 
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 HP:0003401 Paresthesia "Abnormal sensations such as tingling, pricking, or numbness of the skin with no apparent physical cause." [HPO:curators]
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 HP:0003477 Axonal neuropathy 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003581 Onset in adulthood 
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 HP:0003587 Insidious onset 
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 HP:0003676 Progressive disorder 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0003828 Variable expressivity 
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 HP:0003829 Incomplete penetrance 
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 HP:0006895 Lower limb hypertonia 
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 HP:0006984 Distal sensory loss of all modalities 
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 HP:0007340 Lower limb muscle weakness "Weakness of the muscles of the legs." [HPO:curators]
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 HP:0008404 Nail dystrophy, variable 
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 HP:0008944 Distal lower limb muscle weakness and atrophy "Amyotrophy of distal lower leg muscles with resultant weakness." [HPO:curators]
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 HP:0009053 Muscle weakness, lower limb, distal "Weakness of the distal muscles of the legs." [HPO:curators]
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 HP:0010550 Paraplegia "Severe or complete weakness of both lower extremities with sparing of the upper extremities." [HPO:curators]
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 HP:0011448 Ankle clonus "Clonus is an involuntary tendon reflex that causes repeated flexion and extension of the foot. Ankle clonus is tested by rapidly flexing the foot upward." [HPO:probinson]
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 HP:0040083 Toe walking 
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 HP:0100963 Hyperaesthesia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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