ENSG00000198707


Homo sapiens

Features
Gene ID: ENSG00000198707
  
Biological name :CEP290
  
Synonyms : centrosomal protein 290 / CEP290 / O15078
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: q21.32
Gene start: 88049014
Gene end: 88142216
  
Corresponding Affymetrix probe sets: 1556850_at (Human Genome U133 Plus 2.0 Array)   205250_s_at (Human Genome U133 Plus 2.0 Array)   221683_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000448573
Ensembl peptide - ENSP00000448012
Ensembl peptide - ENSP00000473863
Ensembl peptide - ENSP00000308021
Ensembl peptide - ENSP00000380938
Ensembl peptide - ENSP00000446905
Ensembl peptide - ENSP00000447527
Ensembl peptide - ENSP00000447623
NCBI entrez gene - 80184     See in Manteia.
OMIM - 610142
RefSeq - XM_017019983
RefSeq - XM_011538762
RefSeq - XM_011538763
RefSeq - XM_011538764
RefSeq - XM_011538765
RefSeq - XM_011538766
RefSeq - XM_017019980
RefSeq - XM_017019981
RefSeq - XM_017019982
RefSeq - NM_025114
RefSeq - XM_011538756
RefSeq - XM_011538757
RefSeq - XM_011538758
RefSeq - XM_011538759
RefSeq - XM_011538760
RefSeq - XM_011538761
RefSeq Peptide - NP_079390
swissprot - F8W097
swissprot - F8W0V9
swissprot - J3KNF5
swissprot - A0A0A0MS86
swissprot - O15078
swissprot - F8VS29
swissprot - S4R322
Ensembl - ENSG00000198707
  
Related genetic diseases (OMIM): 615991 - ?Bardet-Biedl syndrome 14, 615991
  610188 - Joubert syndrome 5, 610188
  611755 - Leber congenital amaurosis 10, 611755
  611134 - Meckel syndrome 4, 611134
  610189 - Senior-Loken syndrome 6, 610189
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cep290ENSDARG00000062727Danio rerio
 CEP290ENSGALG00000011177Gallus gallus
 Cep290ENSMUSG00000019971Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR026201  Centrosomal protein of 290kDa
 IPR032321  Centrosomal protein of 290kDa, coiled-coil region


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000086 G2/M transition of mitotic cell cycle TAS
 biological_processGO:0010389 regulation of G2/M transition of mitotic cell cycle TAS
 biological_processGO:0015031 protein transport ISS
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0030902 hindbrain development ISS
 biological_processGO:0030916 otic vesicle formation ISS
 biological_processGO:0042462 eye photoreceptor cell development ISS
 biological_processGO:0043312 neutrophil degranulation TAS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0048793 pronephros development ISS
 biological_processGO:0060271 cilium assembly IEA
 biological_processGO:0070201 regulation of establishment of protein localization IMP
 biological_processGO:0090316 positive regulation of intracellular protein transport IMP
 biological_processGO:0097711 ciliary basal body-plasma membrane docking TAS
 cellular_componentGO:0000930 gamma-tubulin complex IDA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005814 centriole IEA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0032391 photoreceptor connecting cilium ISS
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0034451 centriolar satellite IDA
 cellular_componentGO:0035580 specific granule lumen TAS
 cellular_componentGO:0035869 ciliary transition zone IDA
 cellular_componentGO:0036038 MKS complex ISS
 cellular_componentGO:0036064 ciliary basal body IEA
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
Regulation of PLK1 Activity at G2/M Transition
Loss of Nlp from mitotic centrosomes
Recruitment of mitotic centrosome proteins and complexes
Loss of proteins required for interphase microtubule organization from the centrosome
Recruitment of NuMA to mitotic centrosomes
Anchoring of the basal body to the plasma membrane
Neutrophil degranulation
AURKA Activation by TPX2


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
Show

 HP:0000037 Male pseudohermaphroditism "Hermaphroditism refers to a discrepancy between the morphology of the gonads and that of the external genitalia. In male pseudohermaphroditism, the genotype is male (XY) and the external genitalia are imcompletely virilized, ambiguous, or complete female. If gonads are present, they are testes." [HPO:curators]
Show

 HP:0000068 Urethral atresia 
Show

 HP:0000073 Ureteral duplication "A developmental anomaly characterized by the presence of two, instead of one, ureter connecting a kidney to the bladder." [HPO:curators]
Show

 HP:0000083 Renal failure 
Show

 HP:0000090 Nephronophthisis 
Show

 HP:0000100 Nephrotic syndrome 
Show

 HP:0000107 Renal cysts 
Show

 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
Show

 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
Show

 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
Show

 HP:0000221 Furrowed tongue "Accentuation of the grooves on the dorsal surface of the tongue." [pmid:19125428]
Show

 HP:0000238 Hydrocephalus 
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000276 Long face 
Show

 HP:0000293 Full cheeks 
Show

 HP:0000316 Hypertelorism 
Show

 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000365 Hearing loss 
Show

 HP:0000368 Low-set, posteriorly rotated ears 
Show

 HP:0000426 Prominent nasal bridge 
Show

 HP:0000457 Flat nose 
Show

 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
Show

 HP:0000470 Short neck 
Show

 HP:0000480 Retinal coloboma 
Show

 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
Show

 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
Show

 HP:0000494 Downward slanting palpebral fissures 
Show

 HP:0000505 Impaired vision 
Show

 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
Show

 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
Show

 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
Show

 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
Show

 HP:0000528 Anophthalmia "Absence of a true eyeball." [HPO:curators]
Show

 HP:0000529 Progressive visual loss 
Show

 HP:0000532 Chorioretinal abnormality 
Show

 HP:0000547 Tapetoretinal degeneration 
Show

 HP:0000556 Retinal dystrophy 
Show

 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
Show

 HP:0000567 Chorioretinal coloboma 
Show

 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
Show

 HP:0000580 Pigmentary retinopathy 
Show

 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
Show

 HP:0000618 Blindness 
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000647 Sclerocornea 
Show

 HP:0000648 Optic atrophy 
Show

 HP:0000657 Oculomotor apraxia 
Show

 HP:0000707 Neurological abnormality "An abnormality of the central or peripheral nervous system." [HPO:curators]
Show

 HP:0000729 Pervasive developmental disorder 
Show

 HP:0000803 Renal cortical cysts 
Show

 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
Show

 HP:0000864 Abnormality of the hypothalamus-pituitary axis 
Show

 HP:0001141 Severe visual impairment 
Show

 HP:0001161 Polydactyly (hands) 
Show

 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
Show

 HP:0001177 Preaxial polydactyly (hands) "Supernumerary digits located at the radial side of the hand. Polydactyly (supernumerary digits) involving the thumb occurs in many distinct forms of high variability and severity. Ranging from fleshy nubbins over varying degrees of partial duplication/splitting to completely duplicated or even triplicated thumbs or preaxial (on the radial side of the hand) supernumerary digits." [HPO:curators]
Show

 HP:0001249 Mental retardation 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001305 Dandy-Walker malformation "A congenital brain malformation typically characterized by incomplete formation of the cerebellar vermis, dilation of the fourth ventricle, and enlargement of the posterior fossa. In layman s terms, Dandy Walker malformation is a cyst in the cerebellum (typically symmetrical) that is involved with the fourth ventricle. This may interfere with the body s ability to drain cerebrospinal fluid from the brain, resulting in hydrocephalus. Dandy Walker cysts are formed during early embryonic development, while the brain forms. The cyst in the cerebellum typically has several blood vessels running through it connecting to the brain, thereby prohibiting surgical removal." [HPO:curators]
Show

 HP:0001320 Cerebellar vermis hypoplasia 
Show

 HP:0001395 Hepatic fibrosis 
Show

 HP:0001408 Bile duct proliferation 
Show

 HP:0001511 Intrauterine growth retardation 
Show

 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
Show

 HP:0001562 Oligohydramnios 
Show

 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
Show

 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
Show

 HP:0001696 Situs inversus "A left-right reversal (or "mirror reflection") of the anatomical location of the major thoracic and abdominal organs." [HPO:curators]
Show

 HP:0001737 Pancreatic cysts 
Show

 HP:0001746 Asplenia "Absence (aplasia) of the spleen." [HPO:curators]
Show

 HP:0001747 Accessory spleen "An accessory spleen is a round, iso-echogenic, homogenic and smooth structure and is seen as a normal varient mostly on the medial contour of the spleen, near the hilus or around the lower pole. This has no pathogenic relevance." [HPO:curators]
Show

 HP:0001829 Polydactyly (feet) 
Show

 HP:0001830 Postaxial polydactyly (feet) "Polydactyly of the foot most commonly refers to the presence of six toes on one foot. Postaxial polydactyly affects the lateral ray and the duplication may range from a well-formed articulated digit to a rudimentary digit." [HPO:curators]
Show

 HP:0001883 Talipes 
Show

 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
Show

 HP:0002084 Encephalocele 
Show

 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
Show

 HP:0002167 Neurological speech impairment 
Show

 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
Show

 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
Show

 HP:0002269 Neuronal migration disorder 
Show

 HP:0002323 Anencephaly 
Show

 HP:0002335 Agenesis of cerebellar vermis 
Show

 HP:0002404 Thick and elongated superior cerebellar peduncles 
Show

 HP:0002419 Molar tooth sign on MRI 
Show

 HP:0002553 Arched eyebrows 
Show

 HP:0002612 Congenital hepatic fibrosis 
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002789 Tachypnea 
Show

 HP:0002790 Neonatal breathing dysregulation 
Show

 HP:0002871 Central apnea "Apnea resulting from depression of the respiratory centers in the medulla oblongata. There is a lack of respiratory effort rather than obstruction of airflow." [HPO:curators]
Show

 HP:0002876 Tachypnea, episodic 
Show

 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
Show

 HP:0003774 End stage renal disease 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004348 Abnormality of bone mineral density "This term applies to all changes in bone mineralisation and or ossification which (depending on severity) can be seen on x-rays as a change in density and or structure of the bone. Changes may affect all bones of the organism, just certain bones or only parts of bones and include decreased mineralisation as may be seen in osteoporosis or increased mineralisation and or ossification as in osteopetrosis, exostoses or any kind of atypic calicfications of different origin and distribution. The overall amount of mineralisation of the bone-organ can be measured as the amount of matter per cubic centimeter of bones, usually measured by densitometry of the lumbar spine or hip. The measurements are usually reported as g/cm3 or as a Z-score (the number of standard deviations above or below the mean for the patient s age and sex). Note that measurement with this method does not reflect local changes in other bones, and as such might not be correct with regard the hole bone-organ." [HPO:curators]
Show

 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
Show

 HP:0004409 Hyposmia "A decreased sensitivity to odorants (that is, a decreased ability to perceive odors)." [HPO:curators]
Show

 HP:0004422 Biparietal narrowing "A narrowing of the biparietal diameter (i.e., of the transverse distance between the protuberances of the two parietal bones of the skull)." [HPO:curators]
Show

 HP:0004727 impaired renal concentrating ability 
Show

 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
Show

 HP:0006487 Bowing of the long bones 
Show

 HP:0006706 Cystic liver disease 
Show

 HP:0006817 Cerebellar vermis aplasia/hypoplasia "Absence or underdevelopment of the cerebellar vermis." [HPO:curators]
Show

 HP:0006870 Lobar holoprosencephaly "A type of holoprosencephaly in which most of the right and left cerebral hemispheres and lateral ventricles are separated but the most rostral aspect of the telencephalon, the frontal lobes, are fused, especially ventrally." [gc:hpe]
Show

 HP:0007370 Aplasia/Hypoplasia of the corpus callosum "Absence or underdevelopment of the corpus callosum." [HPO:curators]
Show

 HP:0007663 Decreased central vision 
Show

 HP:0007703 Abnormal retinal pigmentation 
Show

 HP:0007875 Congenital blindness 
Show

 HP:0008053 Aplasia/Hypoplasia of the iris "Absence or underdevelopment of the iris." [HPO:curators]
Show

 HP:0008209 Premature ovarian failure 
Show

 HP:0008724 Hypoplastic ovary 
Show

 HP:0008736 Hypoplasia of penis 
Show

 HP:0010295 Aplasia/Hypoplasia of the tongue "Absence or underdevelopment of the tongue." [HPO:curators]
Show

 HP:0010459 True hermaphroditism "The presence of both ovarian and testicular tissues either in the same or in opposite gonads. Affected persons have ambiguous genitalia and may have 46,XX or 46,XY karyotypes or 46,XX/XY mosaicism." [HPO:curators]
Show

 HP:0010579 Cone-shaped epiphyses 
Show

 HP:0010747 Medial flaring of the eyebrow "An abnormal distribution of eyebrow hair growth in the medial direction." [HPO:probinson]
Show

 HP:0012795 Abnormality of the optic disc "A morphological abnormality of the optic disc, i.e., of the portion of the optic nerve clinically visible on fundoscopic examination." [HPO:probinson]
Show

 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
Show

 HP:0100732 Pancreatic fibrosis 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr