ENSG00000198860


Homo sapiens

Features
Gene ID: ENSG00000198860
  
Biological name :TSEN15
  
Synonyms : Q8WW01 / tRNA splicing endonuclease subunit 15 / TSEN15
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: q25.3
Gene start: 184051651
Gene end: 184123978
  
Corresponding Affymetrix probe sets: 225399_at (Human Genome U133 Plus 2.0 Array)   225400_at (Human Genome U133 Plus 2.0 Array)   230257_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000495409
Ensembl peptide - ENSP00000496688
Ensembl peptide - ENSP00000496242
Ensembl peptide - ENSP00000495621
Ensembl peptide - ENSP00000355299
Ensembl peptide - ENSP00000402002
Ensembl peptide - ENSP00000432397
Ensembl peptide - ENSP00000435144
Ensembl peptide - ENSP00000436996
Ensembl peptide - ENSP00000493902
Ensembl peptide - ENSP00000494455
Ensembl peptide - ENSP00000494533
Ensembl peptide - ENSP00000494932
Ensembl peptide - ENSP00000494978
Ensembl peptide - ENSP00000495107
Ensembl peptide - ENSP00000495178
Ensembl peptide - ENSP00000495344
NCBI entrez gene - 116461     See in Manteia.
OMIM - 608756
RefSeq - XM_017000229
RefSeq - XM_006711148
RefSeq - XM_017000228
RefSeq - NM_001127394
RefSeq - NM_001300764
RefSeq - NM_001300766
RefSeq - NM_052965
RefSeq - XM_017000230
RefSeq - XM_011509139
RefSeq Peptide - NP_001120866
RefSeq Peptide - NP_001287693
RefSeq Peptide - NP_001287695
RefSeq Peptide - NP_443197
swissprot - Q8WW01
swissprot - E9PPN1
swissprot - H0YCV5
swissprot - F2Z3M0
swissprot - B1ALV0
Ensembl - ENSG00000198860
  
Related genetic diseases (OMIM): 617026 - Pontocerebellar hypoplasia, type 2F, 617026
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tsen15ENSDARG00000069280Danio rerio
 TSEN15ENSGALG00000004782Gallus gallus
 Tsen15ENSMUSG00000014980Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR018593  tRNA-splicing endonuclease subunit Sen15
 IPR036167  tRNA intron endonuclease, catalytic domain-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090501 RNA phosphodiester bond hydrolysis IEA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0000213 tRNA-intron endonuclease activity IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004519 endonuclease activity IEA


Pathways (from Reactome)
Pathway description
tRNA processing in the nucleus


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002540 Inability to walk 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0003828 Variable expressivity 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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