ENSG00000204406


Homo sapiens

Features
Gene ID: ENSG00000204406
  
Biological name :MBD5
  
Synonyms : MBD5 / methyl-CpG binding domain protein 5 / Q9P267
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q23.1
Gene start: 148021011
Gene end: 148516971
  
Corresponding Affymetrix probe sets: 220195_at (Human Genome U133 Plus 2.0 Array)   227839_at (Human Genome U133 Plus 2.0 Array)   244662_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000393168
Ensembl peptide - ENSP00000493871
Ensembl peptide - ENSP00000490728
Ensembl peptide - ENSP00000490140
Ensembl peptide - ENSP00000487089
Ensembl peptide - ENSP00000486370
Ensembl peptide - ENSP00000486209
Ensembl peptide - ENSP00000485889
Ensembl peptide - ENSP00000384672
Ensembl peptide - ENSP00000386049
NCBI entrez gene - 55777     See in Manteia.
OMIM - 611472
RefSeq - XM_017004485
RefSeq - NM_018328
RefSeq - XM_011511470
RefSeq - XM_011511472
RefSeq - XM_017004482
RefSeq - XM_017004483
RefSeq - XM_017004484
RefSeq Peptide - NP_060798
swissprot - Q9P267
swissprot - A0A1B0GUJ9
swissprot - A0A0D9SG23
swissprot - A0A0D9SF16
swissprot - A0A0D9SEP6
swissprot - A0A1B0GW10
swissprot - E9PHH0
swissprot - H7C066
Ensembl - ENSG00000204406
  
Related genetic diseases (OMIM): 156200 - Mental retardation, autosomal dominant 1, 156200
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 mbd5ENSDARG00000059581Danio rerio
 MBD5ENSGALG00000012449Gallus gallus
 Mbd5ENSMUSG00000036792Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MBD6 / Q96DN6 / methyl-CpG binding domain protein 6ENSG0000016698719


Protein motifs (from Interpro)
Interpro ID Name
 IPR000313  PWWP domain
 IPR001739  Methyl-CpG DNA binding
 IPR016177  DNA-binding domain superfamily
 IPR037385  Methyl-CpG-binding domain protein 5/6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007399 nervous system development IMP
 biological_processGO:0016579 protein deubiquitination TAS
 biological_processGO:0040014 regulation of multicellular organism growth ISS
 biological_processGO:0042593 glucose homeostasis ISS
 biological_processGO:0050795 regulation of behavior IMP
 biological_processGO:0060399 positive regulation of growth hormone receptor signaling pathway ISS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0010369 chromocenter IDA
 cellular_componentGO:0030496 midbody IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IDA


Pathways (from Reactome)
Pathway description
UCH proteinases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000178 Abnormality of lower lip 
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 HP:0000194 Open mouth 
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 HP:0000219 Thin upper lip 
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 HP:0000232 Everted lower lip 
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000278 Retrognathia 
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 HP:0000280 Coarse facial features 
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 HP:0000331 Small chin 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000378 Cup-shaped ears "Small auricles that grow forward over the meatus (ear canal)." [HPO:curators]
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 HP:0000411 Protruding ears 
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 HP:0000414 Bulbous nose 
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 HP:0000448 Prominent nose 
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 HP:0000483 Astigmatism 
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 HP:0000505 Impaired vision 
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 HP:0000540 Hypermetropia 
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 HP:0000545 Myopia 
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 HP:0000565 Esotropia 
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 HP:0000574 Thick eyebrows 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000687 Widely spaced teeth 
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000733 Stereotyped, repetitive behaviour 
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 HP:0000736 Short attention span "Reduced attention span characterized by distractibility and impulsivity but not necessarily satisfying the diagnostic criteria for attention deficit hyperactivity disorder." [HPO:curators]
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 HP:0000749 Paroxysmal bursts of laughter 
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 HP:0000750 Impaired language development 
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 HP:0000752 Hyperactivity 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001385 Hip dysplasia 
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 HP:0001572 Macrodontia "Increased size of one or more teeth." [HPO:curators]
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0001852 Gap between first and second toes "The presence of a larger than normal gap between the first and second toes related to medial displacement of the first toe." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002019 Constipation 
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 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
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 HP:0002360 Sleep disturbances "An abnormality of sleep including such phenomena as 1) insomnia/hypersomnia, 2) non-restorative sleep, 3) sleep schedule disorder, 4) excessive daytime somnolence, 5) sleep apnea, and 6) restlessness." [HPO:curators]
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 HP:0002373 Febrile seizures "Febrile seizures are convulsions induced by a fever in infants or small children and are generally characterized by loss of consciousness and tonic-clonic movements. Most febrile seizures last a minute or two." [HPO:curators]
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 HP:0002463 Language impairment 
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 HP:0002553 Arched eyebrows 
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 HP:0002591 Polyphagia 
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 HP:0002714 Downturned corners of mouth "A morphological `abnormality of the mouth` (HP:0000153) in which the `angle of the mouth` (FMA:77269) is downturned." [HPO:probinson]
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004279 Hypoplastic hand 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0008551 Underdeveloped ears 
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 HP:0008736 Hypoplasia of penis 
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 HP:0008872 Feeding problems in infancy 
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 HP:0008897 Growth retardation, progressive 
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 HP:0010804 Tented upper lip vermilion "Triangular appearance of the oral aperture with the apex in the midpoint of the upper vermilion and the lower vermilion forming the base." [pmid:19125428]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0100716 Autoagression "Aggression towards oneself." [HPO:sdoelken]
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 HP:0200055 Small hands 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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