ENSG00000204614


Homo sapiens

Features
Gene ID: ENSG00000204614
  
Biological name :TRIM40
  
Synonyms : Q6P9F5 / TRIM40 / tripartite motif containing 40
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: p22.1
Gene start: 30136108
Gene end: 30148735
  
Corresponding Affymetrix probe sets: 1553079_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000379826
Ensembl peptide - ENSP00000308310
Ensembl peptide - ENSP00000365914
NCBI entrez gene - 135644     See in Manteia.
OMIM - 616976
RefSeq - XM_011514309
RefSeq - NM_001286633
RefSeq - NM_138700
RefSeq - XM_011514305
RefSeq - XM_011514306
RefSeq - XM_011514308
RefSeq Peptide - NP_001273562
RefSeq Peptide - NP_619645
swissprot - A0A1U9X8U1
swissprot - Q6P9F5
Ensembl - ENSG00000204614
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q3UWA4ENSMUSG00000073399Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR018957  Zinc finger, C3HC4 RING-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030308 negative regulation of cell growth IEA
 biological_processGO:0032088 negative regulation of NF-kappaB transcription factor activity IDA
 biological_processGO:0042177 negative regulation of protein catabolic process IDA
 biological_processGO:0045116 protein neddylation IDA
 biological_processGO:1900181 negative regulation of protein localization to nucleus IDA
 biological_processGO:1901223 negative regulation of NIK/NF-kappaB signaling NAS
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0008385 IkappaB kinase complex IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr