ENSG00000205581


Homo sapiens

Features
Gene ID: ENSG00000205581
  
Biological name :HMGN1
  
Synonyms : high mobility group nucleosome binding domain 1 / HMGN1 / P05114
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 21
Strand: -1
Band: q22.2
Gene start: 39342315
Gene end: 39349647
  
Corresponding Affymetrix probe sets: 200943_at (Human Genome U133 Plus 2.0 Array)   200944_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000395787
Ensembl peptide - ENSP00000395291
Ensembl peptide - ENSP00000396693
Ensembl peptide - ENSP00000414421
Ensembl peptide - ENSP00000288344
Ensembl peptide - ENSP00000370123
Ensembl peptide - ENSP00000370124
Ensembl peptide - ENSP00000370125
NCBI entrez gene - 3150     See in Manteia.
OMIM - 163920
RefSeq - XM_017028338
RefSeq - XM_011529547
RefSeq - XM_011529549
RefSeq - XM_017028332
RefSeq - XM_017028333
RefSeq - XM_017028334
RefSeq - XM_017028335
RefSeq - XM_017028336
RefSeq - NM_004965
RefSeq - XM_011529543
RefSeq - XM_011529544
RefSeq - XM_011529545
RefSeq Peptide - NP_004956
swissprot - F2Z2W6
swissprot - F2Z2Y5
swissprot - A6NL93
swissprot - A6NEL0
swissprot - P05114
swissprot - H7BXJ5
Ensembl - ENSG00000205581
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HMGN1ENSGALG00000016067Gallus gallus
 Hmgn1ENSMUSG00000040681Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000079  High mobility group protein HMGN


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000720 pyrimidine dimer repair by nucleotide-excision repair IEA
 biological_processGO:0006283 transcription-coupled nucleotide-excision repair IEA
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0010224 response to UV-B IEA
 biological_processGO:0010225 response to UV-C IEA
 biological_processGO:0032786 positive regulation of DNA-templated transcription, elongation TAS
 biological_processGO:0040034 regulation of development, heterochronic IEA
 biological_processGO:0048597 post-embryonic camera-type eye morphogenesis IEA
 biological_processGO:0050678 regulation of epithelial cell proliferation IEA
 biological_processGO:1901666 positive regulation of NAD+ ADP-ribosyltransferase activity IEA
 cellular_componentGO:0000785 chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003677 DNA binding TAS
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0031492 nucleosomal DNA binding IEA


Pathways (from Reactome)
Pathway description
Formation of TC-NER Pre-Incision Complex
Transcription-Coupled Nucleotide Excision Repair (TC-NER)
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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