ENSG00000251322


Homo sapiens

Features
Gene ID: ENSG00000251322
  
Biological name :SHANK3
  
Synonyms : SH3 and multiple ankyrin repeat domains 3 / SHANK3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: 1
Band: q13.33
Gene start: 50674415
Gene end: 50733298
  
Corresponding Affymetrix probe sets: 227923_at (Human Genome U133 Plus 2.0 Array)   229698_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000489147
Ensembl peptide - ENSP00000489407
NCBI entrez gene - 85358     See in Manteia.
OMIM - 606230
RefSeq - NM_033517
RefSeq Peptide - NP_277052
swissprot - A0A0U1RR93
swissprot - A0A0U1RQS4
Ensembl - ENSG00000251322
  
Related genetic diseases (OMIM): 606232 - Phelan-McDermid syndrome, 606232
  613950 - {Schizophrenia 15}, 613950
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 shank3aENSDARG00000063332Danio rerio
 shank3bENSDARG00000063054Danio rerio
 ENSGALG00000039165Gallus gallus
 Q4ACU6ENSMUSG00000022623Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9Y566 / SHANK1 / SH3 and multiple ankyrin repeat domains 1ENSG0000016168144
Q9UPX8 / SHANK2 / SH3 and multiple ankyrin repeat domains 2ENSG0000016210529


Protein motifs (from Interpro)
Interpro ID Name
 IPR001452  SH3 domain
 IPR001478  PDZ domain
 IPR001660  Sterile alpha motif domain
 IPR002110  Ankyrin repeat
 IPR013761  Sterile alpha motif/pointed domain superfamily
 IPR020683  Ankyrin repeat-containing domain
 IPR032425  Talin, N-terminal F0 domain
 IPR036028  SH3-like domain superfamily
 IPR036034  PDZ superfamily
 IPR036770  Ankyrin repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000165 MAPK cascade IEA
 biological_processGO:0001838 embryonic epithelial tube formation IEA
 biological_processGO:0007416 synapse assembly IEA
 biological_processGO:0007611 learning or memory IEA
 biological_processGO:0007612 learning IEA
 biological_processGO:0007613 memory IEA
 biological_processGO:0007626 locomotory behavior IEA
 biological_processGO:0021773 striatal medium spiny neuron differentiation IEA
 biological_processGO:0032232 negative regulation of actin filament bundle assembly IEA
 biological_processGO:0035176 social behavior IEA
 biological_processGO:0035640 exploration behavior IEA
 biological_processGO:0035641 locomotory exploration behavior IEA
 biological_processGO:0040011 locomotion IEA
 biological_processGO:0045794 negative regulation of cell volume IEA
 biological_processGO:0048167 regulation of synaptic plasticity IEA
 biological_processGO:0048170 positive regulation of long-term neuronal synaptic plasticity IEA
 biological_processGO:0048854 brain morphogenesis IEA
 biological_processGO:0050885 neuromuscular process controlling balance IEA
 biological_processGO:0051835 positive regulation of synapse structural plasticity IEA
 biological_processGO:0051968 positive regulation of synaptic transmission, glutamatergic IEA
 biological_processGO:0060291 long-term synaptic potentiation IEA
 biological_processGO:0060292 long term synaptic depression IEA
 biological_processGO:0060997 dendritic spine morphogenesis IEA
 biological_processGO:0060999 positive regulation of dendritic spine development IEA
 biological_processGO:0061001 regulation of dendritic spine morphogenesis IEA
 biological_processGO:0071625 vocalization behavior IEA
 biological_processGO:0097107 postsynaptic density assembly IEA
 biological_processGO:0097113 AMPA glutamate receptor clustering IEA
 biological_processGO:0097114 NMDA glutamate receptor clustering IEA
 biological_processGO:0097117 guanylate kinase-associated protein clustering IEA
 biological_processGO:1900271 regulation of long-term synaptic potentiation IEA
 biological_processGO:1900273 positive regulation of long-term synaptic potentiation IEA
 biological_processGO:1900451 positive regulation of glutamate receptor signaling pathway IEA
 biological_processGO:1900452 regulation of long term synaptic depression IEA
 biological_processGO:1904717 regulation of AMPA glutamate receptor clustering IEA
 biological_processGO:2000463 positive regulation of excitatory postsynaptic potential IEA
 biological_processGO:2000821 regulation of grooming behavior IEA
 biological_processGO:2000822 regulation of behavioral fear response IEA
 biological_processGO:2000969 positive regulation of AMPA receptor activity IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0044309 neuron spine IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008022 protein C-terminus binding IEA
 molecular_functionGO:0035255 ionotropic glutamate receptor binding IEA
 molecular_functionGO:0097110 scaffold protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000098 Increased body height 
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 HP:0000110 Renal dysplasia 
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 HP:0000113 Polycystic kidney 
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 HP:0000126 Hydronephrosis 
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 HP:0000164 Abnormality of the teeth "Any abnormality of the primary (deciduous) or permanent teeth." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000268 Dolichocephaly 
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000293 Full cheeks 
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 HP:0000307 Pointed chin 
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 HP:0000331 Small chin 
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 HP:0000336 Prominent supraorbital ridges "Abnormal prominence of the supraorbital ridges, which are bony ridge located above the eye sockets in the area of the eyebrows." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000365 Hearing loss 
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 HP:0000400 Large ears 
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 HP:0000411 Protruding ears 
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 HP:0000414 Bulbous nose 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000490 Deep set eyes 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
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 HP:0000540 Hypermetropia 
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 HP:0000574 Thick eyebrows 
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 HP:0000678 Dental overcrowding 
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 HP:0000689 Dental malocclusion "Dental malocclusion refers to an abnormality of the occlusion, or alignment, of the teeth and the way the upper and lower teeth fit together, resulting in overcrowding of teeth or in abnormal bite patterns." [HPO:curators]
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 HP:0000710 Hyperorality 
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 HP:0000717 Autism 
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000729 Pervasive developmental disorder 
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 HP:0000750 Impaired language development 
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 HP:0000752 Hyperactivity 
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 HP:0000817 Poor eye contact 
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 HP:0000960 Sacral dimple "A subtype of `skin dimples` (HP:0010781) presenting as an indentation in the skin of the intergluteal cleft ." [HPO:probinson]
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 HP:0000966 Hypohidrosis "Abnormally diminished capacity to sweat." [HPO:curators]
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 HP:0001004 Lymphedema 
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 HP:0001176 Large hands 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001270 Motor retardation 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001581 Recurrent skin infections "Infections of the skin that happen multiple times." [HPO:curators]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001800 Hypoplastic toenails "Underdeveloped toenails." [HPO:curators]
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 HP:0002017 Nausea and vomiting 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002046 Intolerance to heat and fever 
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 HP:0002119 Ventriculomegaly 
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 HP:0002136 Broad-based gait "An abnormal gait pattern in which persons stand and walk with their feet spaced widely apart. This is often a component of cerebellar ataxia." [HPO:curators]
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 HP:0002188 Delayed myelination 
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 HP:0002317 Unsteady gait 
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 HP:0002342 Mental retardation, moderate "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 35-49." [HPO:curators]
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 HP:0002518 Periventricular white matter changes 
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 HP:0002572 Episodic vomiting "Paroxysmal, recurrent episodes of vomiting." [HPO:curators]
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 HP:0002721 Immunodeficiency 
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 HP:0003745 Sporadic 
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 HP:0003763 Bruxism 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004691 2-3 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes two and three." [HPO:sdoelken]
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 HP:0005616 Accelerated skeletal maturation "An abnormally increased rate of skeletal maturation. Accelerated skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0007328 Decreased pain sensation "Reduced ability to perceive painful stimuli." [HPO:curators]
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 HP:0008278 Massive cerebellar cortical atrophy with vacuolated or binucleated purkinje cells 
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 HP:0011120 Saddle nose "A depression of the dorsum of the nose with loss of nasal tip support and definition, shortened (vertical) nasal length, overrotation of the nasal tip, and retrusion of the nasal spine and caudal septum." [HPO:probinson]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012167 Hair-pulling "A phenomenon in which persons repetitively pull out their own hair, resulting in noticeable hair loss." [HPO:probinson]
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 HP:0012787 Recurrent pyelonephritis "Repeated episodes of pyelonephritis." [HPO:probinson]
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 HP:0100540 Palpebral edema 
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 HP:0100658 Cellulitis 
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 HP:0100702 Arachnoid cyst "Arachnoid cysts are filled with cerebrospinal fluid encased by arachnoidal cells." [HPO:sdoelken]
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 HP:0100703 Tongue thrusting 
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 HP:0100704 Cortical visual impairment "A form of loss of vision caused by damage to the visual cortex rather than a defect in the eye." [HPO:probinson]
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 HP:0100797 Toenail dysplasia "An abnormality of the development of the toenails." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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